Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   O6U12_RS20525 Genome accession   NZ_CP114899
Coordinates   3882892..3883614 (+) Length   240 a.a.
NCBI ID   WP_026113628.1    Uniprot ID   -
Organism   Bacillus subtilis strain     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3877892..3888614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6U12_RS20500 (O6U12_20500) degS 3878225..3879382 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  O6U12_RS20505 (O6U12_20505) degU 3879465..3880154 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  O6U12_RS20510 (O6U12_20510) fakBA 3880252..3881097 (+) 846 WP_017695310.1 DegV family protein -
  O6U12_RS20515 (O6U12_20515) comFA 3881203..3882594 (+) 1392 WP_017695309.1 ATP-dependent helicase ComFA Machinery gene
  O6U12_RS20520 (O6U12_20520) comFB 3882646..3882928 (+) 283 Protein_3992 late competence development ComFB family protein -
  O6U12_RS20525 (O6U12_20525) comFC 3882892..3883614 (+) 723 WP_026113628.1 comF operon protein ComFC Machinery gene
  O6U12_RS20530 (O6U12_20530) yvyF 3883688..3884107 (+) 420 WP_017695307.1 TIGR03826 family flagellar region protein -
  O6U12_RS20535 (O6U12_20535) flgM 3884188..3884454 (+) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  O6U12_RS20540 (O6U12_20540) flgN 3884470..3884952 (+) 483 WP_041351273.1 flagellar protein FlgN -
  O6U12_RS20545 (O6U12_20545) flgK 3884971..3886494 (+) 1524 WP_041351274.1 flagellar hook-associated protein FlgK -
  O6U12_RS20550 (O6U12_20550) flgL 3886505..3887401 (+) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  O6U12_RS20555 (O6U12_20555) yviE 3887448..3888023 (+) 576 WP_015384781.1 DUF6470 family protein -
  O6U12_RS20560 (O6U12_20560) fliW 3888044..3888475 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27359.77 Da        Isoelectric Point: 9.7832

>NTDB_id=767628 O6U12_RS20525 WP_026113628.1 3882892..3883614(+) (comFC) [Bacillus subtilis strain]
MSNEAGGGIHKLICLLCDSQFSQDVTWIALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRG
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
GRPTHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAKGMNIILIDDLYTTGATLHFAARCLLEKGKAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=767628 O6U12_RS20525 WP_026113628.1 3882892..3883614(+) (comFC) [Bacillus subtilis strain]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GATAGCCCTTTTTTTATTAAAGCCGGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTGTGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGGGGC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GGCAGGCCTACCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAAAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGGCATCTTTTACATTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

96.667

100

0.967