Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   O6U12_RS20505 Genome accession   NZ_CP114899
Coordinates   3879465..3880154 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3874465..3885154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6U12_RS20485 (O6U12_20485) tagO 3875031..3876107 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  O6U12_RS20490 (O6U12_20490) tagV 3876180..3877355 (-) 1176 WP_017695311.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  O6U12_RS20495 (O6U12_20495) yvyE 3877355..3878008 (-) 654 WP_003227979.1 YigZ family protein -
  O6U12_RS20500 (O6U12_20500) degS 3878225..3879382 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  O6U12_RS20505 (O6U12_20505) degU 3879465..3880154 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  O6U12_RS20510 (O6U12_20510) fakBA 3880252..3881097 (+) 846 WP_017695310.1 DegV family protein -
  O6U12_RS20515 (O6U12_20515) comFA 3881203..3882594 (+) 1392 WP_017695309.1 ATP-dependent helicase ComFA Machinery gene
  O6U12_RS20520 (O6U12_20520) comFB 3882646..3882928 (+) 283 Protein_3992 late competence development ComFB family protein -
  O6U12_RS20525 (O6U12_20525) comFC 3882892..3883614 (+) 723 WP_026113628.1 comF operon protein ComFC Machinery gene
  O6U12_RS20530 (O6U12_20530) yvyF 3883688..3884107 (+) 420 WP_017695307.1 TIGR03826 family flagellar region protein -
  O6U12_RS20535 (O6U12_20535) flgM 3884188..3884454 (+) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  O6U12_RS20540 (O6U12_20540) flgN 3884470..3884952 (+) 483 WP_041351273.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=767626 O6U12_RS20505 WP_003219701.1 3879465..3880154(+) (degU) [Bacillus subtilis strain]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=767626 O6U12_RS20505 WP_003219701.1 3879465..3880154(+) (degU) [Bacillus subtilis strain]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1