Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | O6U12_RS04640 | Genome accession | NZ_CP114899 |
| Coordinates | 859138..860175 (+) | Length | 345 a.a. |
| NCBI ID | WP_017696193.1 | Uniprot ID | - |
| Organism | Bacillus subtilis strain | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 854138..865175
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6U12_RS04620 (O6U12_04620) | rsbRD | 854359..855195 (+) | 837 | WP_017696187.1 | RsbT co-antagonist protein RsbRD | - |
| O6U12_RS04625 (O6U12_04625) | yqhB | 855248..856576 (-) | 1329 | WP_017696188.1 | hemolysin family protein | - |
| O6U12_RS04630 (O6U12_04630) | corA | 856718..857671 (+) | 954 | WP_017696189.1 | magnesium transporter CorA | - |
| O6U12_RS04635 (O6U12_04635) | comGA | 858081..859151 (+) | 1071 | WP_017696192.1 | competence protein ComGA | Machinery gene |
| O6U12_RS04640 (O6U12_04640) | comGB | 859138..860175 (+) | 1038 | WP_017696193.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| O6U12_RS04645 (O6U12_04645) | comGC | 860189..860485 (+) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
| O6U12_RS04650 (O6U12_04650) | comGD | 860475..860906 (+) | 432 | WP_017696194.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| O6U12_RS04655 (O6U12_04655) | comGE | 860890..861237 (+) | 348 | WP_017696195.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| O6U12_RS04660 (O6U12_04660) | comGF | 861263..861646 (+) | 384 | WP_017696196.1 | ComG operon protein ComGF | Machinery gene |
| O6U12_RS04665 (O6U12_04665) | comGG | 861647..862021 (+) | 375 | WP_017696197.1 | ComG operon protein ComGG | Machinery gene |
| O6U12_RS04670 (O6U12_04670) | spoIITA | 862092..862271 (+) | 180 | WP_014480252.1 | YqzE family protein | - |
| O6U12_RS04675 (O6U12_04675) | yqzG | 862313..862639 (-) | 327 | WP_026113671.1 | YqzG/YhdC family protein | - |
| O6U12_RS04680 (O6U12_04680) | tapA | 862910..863665 (+) | 756 | WP_017696199.1 | amyloid fiber anchoring/assembly protein TapA | - |
| O6U12_RS04685 (O6U12_04685) | sipW | 863649..864221 (+) | 573 | WP_080031082.1 | signal peptidase I SipW | - |
| O6U12_RS04690 (O6U12_04690) | tasA | 864286..865071 (+) | 786 | WP_017696201.1 | biofilm matrix protein TasA | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39998.44 Da Isoelectric Point: 9.8971
>NTDB_id=767572 O6U12_RS04640 WP_017696193.1 859138..860175(+) (comGB) [Bacillus subtilis strain]
MKKIRKTWPLKDQARLLKRLGEMTASGYTLLDGLRLMELQMNKKQSADLTDTVTRLREGAPFYQVLKRLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLILFSAGIGIYYWLVFKKKSPARQMLICVRIPFVGKLVRLFNSYFFSLQLSSLLKSGLSIYDSLHAFKHQT
FLPFYRCEAEHVIERLKTGESIEAAICGSPFFETDFSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLLPMYQMMNQM
MKKIRKTWPLKDQARLLKRLGEMTASGYTLLDGLRLMELQMNKKQSADLTDTVTRLREGAPFYQVLKRLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLILFSAGIGIYYWLVFKKKSPARQMLICVRIPFVGKLVRLFNSYFFSLQLSSLLKSGLSIYDSLHAFKHQT
FLPFYRCEAEHVIERLKTGESIEAAICGSPFFETDFSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLLPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=767572 O6U12_RS04640 WP_017696193.1 859138..860175(+) (comGB) [Bacillus subtilis strain]
ATGAAAAAGATTAGAAAAACCTGGCCGTTAAAGGATCAGGCCCGGTTATTAAAGCGGCTCGGAGAAATGACGGCAAGCGG
ATATACACTTCTGGATGGATTGCGACTGATGGAACTTCAGATGAATAAGAAGCAGTCAGCTGACTTGACTGACACGGTCA
CTCGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTATTAAAGCGTTTGTCATTTCATAAGGAAGCTGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCCATGATCCAGAGCGGAGAGCTGCTTGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGGGTGCTGCGCTATCCGCTTTTCCTCATCTTCACCGTTGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAATTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTGATTCTTTTTTCAGCTGGTATCGGGATTTATTACTGGCTTGTGTTTAAGAA
AAAATCACCTGCCAGGCAAATGCTTATTTGTGTCAGGATTCCTTTTGTTGGAAAGCTTGTCAGGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCCATTTATGACAGCCTTCATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCAGAACACGTGATTGAACGGCTAAAAACCGGGGAATCAATTGAAGCTGCTATTTG
TGGGAGCCCTTTTTTTGAAACTGATTTTTCAAAAGTCATATCCCACGGCCAGCTGAGCGGCCGCCTAGATCGTGAGCTTT
TCACATACAGCCAGTTCATATTGCAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCGATGATTTAT
GGATTTGTTGCTGCAATGATCTTACTTGTGTATTTATCTATGCTTTTGCCTATGTATCAGATGATGAATCAAATGTGA
ATGAAAAAGATTAGAAAAACCTGGCCGTTAAAGGATCAGGCCCGGTTATTAAAGCGGCTCGGAGAAATGACGGCAAGCGG
ATATACACTTCTGGATGGATTGCGACTGATGGAACTTCAGATGAATAAGAAGCAGTCAGCTGACTTGACTGACACGGTCA
CTCGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTATTAAAGCGTTTGTCATTTCATAAGGAAGCTGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCCATGATCCAGAGCGGAGAGCTGCTTGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGGGTGCTGCGCTATCCGCTTTTCCTCATCTTCACCGTTGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAATTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTGATTCTTTTTTCAGCTGGTATCGGGATTTATTACTGGCTTGTGTTTAAGAA
AAAATCACCTGCCAGGCAAATGCTTATTTGTGTCAGGATTCCTTTTGTTGGAAAGCTTGTCAGGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCCATTTATGACAGCCTTCATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCAGAACACGTGATTGAACGGCTAAAAACCGGGGAATCAATTGAAGCTGCTATTTG
TGGGAGCCCTTTTTTTGAAACTGATTTTTCAAAAGTCATATCCCACGGCCAGCTGAGCGGCCGCCTAGATCGTGAGCTTT
TCACATACAGCCAGTTCATATTGCAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCGATGATTTAT
GGATTTGTTGCTGCAATGATCTTACTTGTGTATTTATCTATGCTTTTGCCTATGTATCAGATGATGAATCAAATGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
93.808 |
93.623 |
0.878 |