Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   QPK28_RS08860 Genome accession   NZ_CP126576
Coordinates   1722414..1724462 (+) Length   682 a.a.
NCBI ID   WP_003181696.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CQMB003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1717414..1729462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS08830 spoVM 1717961..1718041 (+) 81 WP_003221545.1 stage V sporulation protein SpoVM -
  QPK28_RS08835 rpmB 1718146..1718334 (-) 189 WP_003181685.1 50S ribosomal protein L28 -
  QPK28_RS08840 - 1718622..1718984 (+) 363 WP_003181687.1 Asp23/Gls24 family envelope stress response protein -
  QPK28_RS08845 - 1719002..1720672 (+) 1671 WP_003181689.1 DAK2 domain-containing protein -
  QPK28_RS08850 sdaAB 1720853..1721515 (+) 663 WP_003181691.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  QPK28_RS08855 sdaAA 1721534..1722436 (+) 903 WP_003181693.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  QPK28_RS08860 recG 1722414..1724462 (+) 2049 WP_003181696.1 ATP-dependent DNA helicase RecG Machinery gene
  QPK28_RS08865 fapR 1724579..1725145 (+) 567 WP_003181698.1 transcription factor FapR -
  QPK28_RS08870 plsX 1725163..1726155 (+) 993 WP_003181700.1 phosphate acyltransferase PlsX -
  QPK28_RS08875 fabD 1726173..1727132 (+) 960 WP_003181702.1 ACP S-malonyltransferase -
  QPK28_RS08880 fabG 1727119..1727862 (+) 744 WP_003181704.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  QPK28_RS08885 acpP 1727939..1728172 (+) 234 WP_003181706.1 acyl carrier protein -
  QPK28_RS08890 rnc 1728314..1729063 (+) 750 WP_009328527.1 ribonuclease III -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 77613.10 Da        Isoelectric Point: 7.3550

>NTDB_id=767463 QPK28_RS08860 WP_003181696.1 1722414..1724462(+) (recG) [Bacillus licheniformis strain CQMB003]
MEHNLQLSISVIKGVGTETEKTLNELGIYTVLDLLNYFPYRYDDYELRDLEDVAHDERVTVEGKVHSEPSLAYYGKKRSR
LTFRLLVGNYLITAVCFNRPYLKKKLAIGSIVTVTGKWDKHRQSVMVQELKNGPHQGDQSIEPVYSVKENITVKTMRKLI
QEAVRSHLPFAEDPLPEKLRTAYKLLSYQEAVKAMHKPESREALKHARRRFVYEEFLLFQLKMQALRKFEREASDGISHT
FRLEDVNSFVKSLPFPLTNAQAKALDDILRDMASGYKMNRLLQGDVGSGKTAVAAIALYASLLSGFQGAMMVPTEILAEQ
HADSLVSLFEQHDVNVALLTSSVKGKRRRELLDRLKEGEIDILVGTHALIQDDVHFKQLGLVITDEQHRFGVEQRKKLRS
KGKDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLERILAFIDKELKKGRQAYVICPLIEESD
KLDVQNAIDVHSMLTHAFRGRWQIGLMHGKLSNDEKEQVMRQFSKNECQILVSTTVVEVGVNVPNATVMLIYDADRFGLS
QLHQLRGRVGRGDHQSYCILMADPKSETGKERMSIMSETTDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARRDAAELVSSKAFWTDAEYKSLREHLQNSGVMDGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=767463 QPK28_RS08860 WP_003181696.1 1722414..1724462(+) (recG) [Bacillus licheniformis strain CQMB003]
GTGGAACACAATCTGCAACTTAGTATATCTGTTATAAAAGGCGTCGGGACGGAAACGGAAAAAACGTTGAACGAGCTCGG
AATCTATACGGTTCTCGATCTTTTAAACTACTTCCCGTACCGATATGACGATTATGAATTGCGCGATTTGGAAGATGTGG
CACACGATGAACGAGTGACGGTGGAAGGGAAGGTTCACAGCGAGCCTTCTCTTGCCTATTACGGGAAAAAGCGGAGCCGT
CTCACGTTCCGGCTTTTGGTCGGGAACTATTTGATCACAGCGGTTTGCTTTAACAGGCCTTATTTGAAAAAAAAGCTTGC
GATCGGCTCGATTGTTACCGTAACCGGAAAATGGGACAAGCACAGACAATCCGTGATGGTGCAAGAGCTGAAAAACGGGC
CGCACCAGGGTGATCAGTCGATTGAACCCGTATACTCCGTCAAAGAAAACATCACCGTAAAGACGATGAGGAAATTGATT
CAGGAAGCTGTCCGCAGCCATTTGCCGTTTGCCGAAGATCCTCTTCCGGAAAAGCTTCGGACCGCCTACAAACTTCTGTC
TTACCAGGAGGCGGTAAAGGCGATGCACAAGCCCGAGTCGAGGGAAGCTTTAAAGCATGCGCGGCGCCGTTTTGTATATG
AGGAATTTTTGCTGTTTCAGCTGAAAATGCAGGCTTTGCGAAAGTTCGAGCGGGAAGCGTCCGACGGAATCAGCCACACC
TTTCGGCTCGAAGACGTCAATTCGTTTGTCAAAAGCCTTCCGTTTCCTTTGACAAACGCGCAGGCGAAAGCGCTCGACGA
CATATTAAGGGACATGGCTTCAGGGTATAAAATGAATCGGCTTTTGCAAGGAGACGTCGGTTCAGGCAAAACAGCCGTCG
CCGCGATTGCGCTATACGCCTCGCTGCTTTCCGGATTCCAGGGGGCGATGATGGTTCCGACCGAAATACTGGCGGAACAG
CACGCCGATTCGCTTGTATCCCTCTTTGAGCAGCACGACGTCAATGTGGCGCTTTTAACAAGCTCTGTGAAAGGGAAAAG
GAGAAGAGAGCTTTTAGACAGATTAAAAGAAGGAGAAATTGATATTTTGGTGGGGACGCACGCCCTTATTCAGGACGATG
TCCACTTTAAACAGCTCGGGCTCGTGATCACCGATGAACAGCACCGCTTCGGCGTCGAGCAAAGAAAAAAACTGAGAAGC
AAAGGGAAAGATCCCGATGTCTTGTTTATGACGGCGACGCCGATTCCGAGAACACTGGCGATCACGGTTTTCGGGGAAAT
GGATGTGTCCGTCATCGATGAAATGCCGGCTGGGCGAAAGCGGATCGAGACGTATTGGGTAAAGCACGACATGCTCGAAC
GGATTCTCGCGTTTATCGATAAAGAACTGAAAAAAGGCAGACAGGCGTATGTGATCTGTCCCTTGATTGAAGAGTCGGAC
AAGCTCGACGTTCAAAATGCAATTGATGTGCACAGCATGCTGACTCATGCCTTCAGGGGAAGATGGCAGATCGGTCTCAT
GCACGGAAAGCTGTCAAATGACGAGAAAGAACAGGTAATGAGGCAGTTCAGCAAAAACGAATGCCAGATTCTCGTTTCCA
CAACCGTCGTTGAAGTCGGGGTAAACGTTCCGAATGCGACGGTCATGCTGATCTATGATGCCGACCGGTTCGGTCTTTCC
CAGCTGCATCAGCTTCGCGGCCGGGTCGGACGGGGCGATCACCAGTCGTATTGCATCCTGATGGCAGACCCGAAATCTGA
GACGGGAAAAGAGCGCATGAGCATCATGTCTGAGACGACGGACGGCTTTGAGCTTTCTGAAAAAGATCTTGAACTCAGAG
GGCCCGGGGACTTTTTCGGCAAGAAACAGAGCGGGATGCCGGAGTTTAAAGTCGCCGACATGGTTCACGACTACCGCGCG
CTGGAAACGGCAAGAAGAGACGCTGCAGAACTTGTCTCTTCAAAAGCGTTCTGGACGGATGCCGAATATAAAAGCCTGCG
GGAACACTTGCAAAACAGCGGGGTTATGGACGGAGAAAAGCTGAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(258-415)

RecG wedge domain (RecG_wedge)

(9-164)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(599-672)

Helicase conserved C-terminal domain (Helicase_C)

(452-572)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

80.938

100

0.809
  recG/mmsA Streptococcus pneumoniae R6

49.037

98.974

0.485
  recG/mmsA Streptococcus pneumoniae R36A

49.037

98.974

0.485
  recG Neisseria meningitidis strain C311

39.445

95.161

0.375