Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   O2T12_RS23320 Genome accession   NZ_CP114886
Coordinates   5602506..5602904 (+) Length   132 a.a.
NCBI ID   WP_101745268.1    Uniprot ID   -
Organism   Endozoicomonas sp. GU-1 strain Ap1-3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5597506..5607904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2T12_RS23300 (O2T12_23300) pckA 5597725..5599338 (-) 1614 WP_269671642.1 phosphoenolpyruvate carboxykinase (ATP) -
  O2T12_RS23305 (O2T12_23305) hslO 5599666..5600535 (-) 870 WP_269676587.1 Hsp33 family molecular chaperone HslO -
  O2T12_RS23310 (O2T12_23310) - 5600936..5602051 (-) 1116 WP_332328262.1 TolC family outer membrane protein -
  O2T12_RS23315 (O2T12_23315) - 5601955..5602245 (-) 291 WP_269671645.1 hypothetical protein -
  O2T12_RS23320 (O2T12_23320) pilG 5602506..5602904 (+) 399 WP_101745268.1 twitching motility response regulator PilG Regulator
  O2T12_RS23325 (O2T12_23325) pilH 5603033..5603407 (+) 375 WP_101745267.1 twitching motility response regulator PilH -
  O2T12_RS23330 (O2T12_23330) - 5603506..5604063 (+) 558 WP_269671646.1 chemotaxis protein CheW -
  O2T12_RS23335 (O2T12_23335) - 5604103..5606171 (+) 2069 Protein_4571 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14641.87 Da        Isoelectric Point: 5.1824

>NTDB_id=767376 O2T12_RS23320 WP_101745268.1 5602506..5602904(+) (pilG) [Endozoicomonas sp. GU-1 strain Ap1-3]
MQGSGTDLKVMIIDDSKTIRRTAETLLTKAGCQVVTATDGFDALAKIAESEPDIIFVDIMMPRLDGYQTCALIKNNNAFK
QIPVIMLSSKDGLFDRARGRIAGSDYYLTKPFSRDELFTTIREHCPDYALAV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=767376 O2T12_RS23320 WP_101745268.1 5602506..5602904(+) (pilG) [Endozoicomonas sp. GU-1 strain Ap1-3]
ATGCAAGGTAGCGGAACAGACCTCAAGGTCATGATCATCGATGATAGCAAAACGATTCGTCGTACAGCTGAAACACTTCT
GACCAAGGCGGGTTGCCAGGTGGTTACTGCCACCGATGGCTTTGACGCCTTGGCAAAAATCGCCGAGTCCGAACCGGACA
TCATCTTTGTCGATATCATGATGCCTCGTCTGGACGGCTATCAAACCTGTGCGCTGATTAAAAATAACAACGCATTTAAA
CAGATTCCCGTCATCATGCTCTCCAGTAAGGACGGTCTCTTCGACCGTGCCAGAGGACGAATTGCCGGTTCAGATTACTA
CCTGACCAAGCCATTCAGCCGTGATGAGCTGTTCACAACGATTCGGGAACACTGCCCTGACTATGCTCTGGCCGTTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

72.581

93.939

0.682
  vicR Streptococcus mutans UA159

41.026

88.636

0.364
  pilH Synechocystis sp. PCC 6803

42.105

86.364

0.364