Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   O6R09_RS06805 Genome accession   NZ_CP114883
Coordinates   1336949..1337950 (-) Length   333 a.a.
NCBI ID   WP_154455474.1    Uniprot ID   -
Organism   Streptococcus alactolyticus strain LGM     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1331949..1342950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6R09_RS06790 (O6R09_06790) thrS 1332233..1334176 (-) 1944 WP_154455471.1 threonine--tRNA ligase -
  O6R09_RS09280 - 1334169..1334360 (-) 192 Protein_1281 hypothetical protein -
  O6R09_RS06795 (O6R09_06795) - 1334487..1335818 (-) 1332 WP_154455472.1 glycosyltransferase family 4 protein -
  O6R09_RS06800 (O6R09_06800) - 1335823..1336818 (-) 996 WP_154455473.1 glycosyltransferase -
  O6R09_RS06805 (O6R09_06805) ccpA 1336949..1337950 (-) 1002 WP_154455474.1 catabolite control protein A Regulator
  O6R09_RS06810 (O6R09_06810) - 1338171..1339256 (+) 1086 WP_154455475.1 M24 family metallopeptidase -
  O6R09_RS06815 (O6R09_06815) - 1339295..1339621 (-) 327 WP_167829331.1 DMT family transporter -
  O6R09_RS06820 (O6R09_06820) - 1339797..1340477 (+) 681 WP_154455476.1 NAD(P)H-dependent oxidoreductase -
  O6R09_RS06825 (O6R09_06825) - 1340520..1340819 (-) 300 WP_154455477.1 bacteriocin immunity protein -
  O6R09_RS06830 (O6R09_06830) smpB 1340975..1341442 (-) 468 WP_154455425.1 SsrA-binding protein SmpB -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36652.59 Da        Isoelectric Point: 4.8465

>NTDB_id=767344 O6R09_RS06805 WP_154455474.1 1336949..1337950(-) (ccpA) [Streptococcus alactolyticus strain LGM]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIERLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEINVINTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPVVLAGTVDLDHQLPS
VNIDYKAAVADVVDRLAENNQEIAFVSGPLIDEINGKVRLAGYKQGLEKNNLSFKEGLVFEINYNYKDGFELAKRVLNSG
ATAAYVAEDELAAGLLNGLFEAGVNVPEDFEIITSNDSPITSYTRPNLTSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
ILNHGVTVRGTTR

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=767344 O6R09_RS06805 WP_154455474.1 1336949..1337950(-) (ccpA) [Streptococcus alactolyticus strain LGM]
ATGAATACTGATGATACGATTACAATTTACGACGTTGCCCGAGAAGCTGGCGTTTCTATGGCAACTGTCAGCCGTGTTGT
AAACGGAAACAAAAATGTCAAAGAAAACACACGTAAAAAAGTTCTTGAAGTCATTGAACGTTTGGATTATCGTCCAAATG
CCGTTGCTCGTGGTTTGGCAAGTAAAAAAACGACAACTGTCGGTGTGGTTATCCCAAATATTGCCAATAGTTATTTCTCA
ATTCTAGCAAAAGGGATAGATGATATCGCTGCTATGTATAAGTATAATATTGTCCTAGCATCTAGTGATGAAGACGATGA
CAAAGAAATCAACGTTATCAACACCTTGTTTGCCAAACAAGTGGACGGTATTATCTTTATGGGACACCATTTGACTGAAA
AAATTCGTGCAGAGTTCTCTCGCTCACGTACACCAGTTGTTCTTGCCGGTACTGTTGATTTAGACCACCAATTGCCAAGT
GTTAATATTGATTACAAGGCTGCTGTGGCTGATGTTGTGGATCGCTTAGCTGAGAATAACCAAGAAATCGCTTTTGTTTC
AGGTCCGCTCATTGACGAAATCAATGGTAAAGTTCGCTTAGCTGGCTATAAGCAAGGTCTTGAAAAGAACAACTTATCGT
TCAAAGAAGGTCTTGTCTTTGAAATCAATTACAACTATAAAGATGGGTTTGAGTTAGCCAAGCGTGTGCTCAATTCAGGT
GCTACCGCAGCTTATGTGGCAGAAGATGAATTAGCAGCAGGCTTGCTTAATGGCTTGTTTGAAGCGGGTGTCAATGTTCC
AGAAGATTTTGAAATCATCACAAGCAATGATTCACCAATCACTTCCTACACACGTCCAAACCTAACAAGTATCAGTCAGC
CAGTTTATGATTTAGGGGCTGTTAGTATGCGTATGCTCACTAAAATCATGAACAAAGAAGAGTTAGAAGAAAAAGAAATC
ATTCTAAACCATGGCGTGACTGTACGTGGAACCACACGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

77.477

100

0.775

  ccpA Streptococcus pneumoniae D39

75.676

100

0.757

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

56.798

99.399

0.565