Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   LL303_RS02420 Genome accession   NZ_CP126467
Coordinates   450093..450875 (+) Length   260 a.a.
NCBI ID   WP_010905316.1    Uniprot ID   Q9CIG2
Organism   Lactococcus lactis subsp. lactis strain 303     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 445093..455875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL303_RS02395 (LL303_02400) vicX 445116..445928 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  LL303_RS02400 (LL303_02405) vicK 446099..447541 (-) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK Regulator
  LL303_RS02405 (LL303_02410) yycF 447534..448235 (-) 702 WP_003131580.1 response regulator YycF -
  LL303_RS02410 (LL303_02415) tmk 448413..449048 (+) 636 WP_012897230.1 dTMP kinase -
  LL303_RS02415 (LL303_02420) - 449181..450041 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  LL303_RS02420 (LL303_02425) yaaT 450093..450875 (+) 783 WP_010905316.1 stage 0 sporulation family protein Regulator
  LL303_RS02425 (LL303_02430) yabA 450868..451194 (+) 327 WP_003131570.1 DNA replication initiation control protein YabA -
  LL303_RS02430 (LL303_02435) rsmI 451194..452069 (+) 876 WP_010905318.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LL303_RS02435 (LL303_02440) - 452146..452337 (-) 192 WP_003131566.1 hypothetical protein -
  LL303_RS02440 (LL303_02445) mvk 452400..453332 (-) 933 WP_003131564.1 mevalonate kinase -
  LL303_RS02445 (LL303_02450) mvaD 453638..454594 (+) 957 WP_010905319.1 diphosphomevalonate decarboxylase -
  LL303_RS02450 (LL303_02455) - 454581..455570 (+) 990 WP_095348288.1 mevalonate kinase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29803.27 Da        Isoelectric Point: 6.0566

>NTDB_id=767332 LL303_RS02420 WP_010905316.1 450093..450875(+) (yaaT) [Lactococcus lactis subsp. lactis strain 303]
MIYEIKFAHGESNVFAISDIELAPQTEVILRSDKGNFYGKIVREISEEANLEIHHTIVREVNEDDLQVIAKLEERSKQAK
DKVRQLVIEQGLEMKIIDVAYNFDQMQLFISFTAENRVDFRLLLRELATTFRIRIELRQIGPRDAAKIHGGLGPCGRPLC
CSEFVYEFPNVSIKMAKNQNLSLKQNKLNGLCGRLMCCLTYEDSFYKEAQQLFPDFGEFVTTSEGKGKVVGLNVLKNRVK
IRFGEYSKDFELAEIEVNHG

Nucleotide


Download         Length: 783 bp        

>NTDB_id=767332 LL303_RS02420 WP_010905316.1 450093..450875(+) (yaaT) [Lactococcus lactis subsp. lactis strain 303]
ATGATTTATGAAATAAAATTTGCACATGGCGAATCAAATGTATTTGCAATAAGTGATATAGAACTTGCTCCACAAACAGA
AGTTATCCTTCGTTCAGATAAGGGAAACTTTTACGGAAAAATTGTACGTGAAATTTCTGAAGAAGCGAATCTTGAAATTC
ACCACACGATTGTGCGTGAAGTAAATGAGGATGATCTCCAAGTTATTGCAAAACTTGAAGAACGTTCTAAACAAGCCAAA
GATAAAGTTCGCCAACTTGTCATCGAACAAGGTTTGGAAATGAAAATTATTGATGTTGCTTATAATTTCGACCAAATGCA
ACTTTTTATTTCGTTTACAGCAGAGAATCGTGTTGATTTTCGATTGCTTTTGCGTGAGTTGGCAACAACTTTTAGAATTA
GGATTGAACTTCGCCAAATTGGGCCAAGAGATGCGGCTAAAATTCATGGTGGACTTGGACCTTGTGGACGTCCTTTGTGC
TGTTCTGAGTTTGTTTATGAATTTCCAAATGTTTCAATCAAAATGGCCAAAAATCAAAATCTATCTTTGAAACAAAATAA
ATTGAACGGTCTTTGCGGTCGTTTGATGTGCTGTTTAACTTATGAAGATAGTTTTTATAAAGAAGCCCAACAACTTTTCC
CAGATTTTGGTGAGTTTGTAACTACCTCAGAAGGAAAAGGAAAAGTTGTTGGCTTAAATGTTTTAAAAAATAGAGTAAAA
ATCCGCTTTGGAGAATATAGCAAGGATTTTGAACTTGCAGAAATTGAGGTGAATCATGGCTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(56-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

46.119

84.231

0.388