Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LL303_RS02395 Genome accession   NZ_CP126467
Coordinates   445116..445928 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis subsp. lactis strain 303     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 440116..450928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL303_RS02370 (LL303_02375) ytpR 440342..440968 (+) 627 WP_031559372.1 YtpR family tRNA-binding protein -
  LL303_RS02375 (LL303_02380) nox 441131..442471 (+) 1341 WP_023163754.1 H2O-forming NADH oxidase -
  LL303_RS02380 (LL303_02385) - 442561..442950 (+) 390 WP_023163755.1 single-stranded DNA-binding protein -
  LL303_RS02385 (LL303_02390) groES 443070..443354 (+) 285 WP_003131589.1 co-chaperone GroES -
  LL303_RS02390 (LL303_02395) groL 443442..445070 (+) 1629 WP_003131585.1 chaperonin GroEL -
  LL303_RS02395 (LL303_02400) vicX 445116..445928 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  LL303_RS02400 (LL303_02405) vicK 446099..447541 (-) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK Regulator
  LL303_RS02405 (LL303_02410) yycF 447534..448235 (-) 702 WP_003131580.1 response regulator YycF -
  LL303_RS02410 (LL303_02415) tmk 448413..449048 (+) 636 WP_012897230.1 dTMP kinase -
  LL303_RS02415 (LL303_02420) - 449181..450041 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  LL303_RS02420 (LL303_02425) yaaT 450093..450875 (+) 783 WP_010905316.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=767329 LL303_RS02395 WP_003131583.1 445116..445928(-) (vicX) [Lactococcus lactis subsp. lactis strain 303]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=767329 LL303_RS02395 WP_003131583.1 445116..445928(-) (vicX) [Lactococcus lactis subsp. lactis strain 303]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCTTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685