Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   O6R09_RS02900 Genome accession   NZ_CP114883
Coordinates   532975..534777 (+) Length   600 a.a.
NCBI ID   WP_269725750.1    Uniprot ID   -
Organism   Streptococcus alactolyticus strain LGM     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 527975..539777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6R09_RS02875 (O6R09_02875) queA 528586..529614 (-) 1029 WP_154454417.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  O6R09_RS02880 (O6R09_02880) - 529856..530356 (+) 501 WP_154454416.1 VIT1/CCC1 transporter family protein -
  O6R09_RS02885 (O6R09_02885) nagB 530495..531199 (+) 705 WP_154454415.1 glucosamine-6-phosphate deaminase -
  O6R09_RS02890 (O6R09_02890) - 531246..531962 (+) 717 WP_269725749.1 pseudouridine synthase -
  O6R09_RS02895 (O6R09_02895) coiA 532014..532973 (+) 960 WP_204984749.1 competence protein CoiA Machinery gene
  O6R09_RS02900 (O6R09_02900) pepF 532975..534777 (+) 1803 WP_269725750.1 oligoendopeptidase F Regulator
  O6R09_RS02905 (O6R09_02905) - 534858..535469 (+) 612 WP_235280810.1 HAD-IA family hydrolase -
  O6R09_RS02910 (O6R09_02910) - 535523..536224 (+) 702 WP_154454411.1 O-methyltransferase -
  O6R09_RS02915 (O6R09_02915) - 536290..537372 (+) 1083 WP_168260995.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69033.89 Da        Isoelectric Point: 4.6240

>NTDB_id=767329 O6R09_RS02900 WP_269725750.1 532975..534777(+) (pepF) [Streptococcus alactolyticus strain LGM]
MSDNRRHIDEKYQWDLRTVFATDEAWERELAAIASDLDEAKKCKGHLVESSQNLLSITEQYLDLSRRLEKVYVYASMKND
QDTTVAKYQEYQAKATALYAKFSEVFAFYESELLQLSQATFADFVAETPALSAYAHFFEQLFKRQPHVLSQAEEELLAGA
QEIFGAAGETFGILDNADMVFPIVSDDEGNQVQLTHGNFISLLESKNREVRKEAYQAMYATYEQFQHTYAKTLQTNVKVH
NYDARVHHFQSAREAALAANDIPESVYDTLVETVNDYLPLLHRYVALRKKILKLDDLKMYDLHTPLSEMDMSFTYEEALK
KAEEVLAVFGEDYAARVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVTDDKARFAILNHYLDGFKGTIFRQTQFAEFEDSIHKADQAGDVLTSDY
LNQLYAELNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTQADIDRYLDYLKEGSSDYPL
NVIAKAGVDMTSRDYLDAAFKIFEERLNELEALVEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=767329 O6R09_RS02900 WP_269725750.1 532975..534777(+) (pepF) [Streptococcus alactolyticus strain LGM]
ATGTCAGATAATCGTCGTCATATTGATGAAAAATACCAATGGGATTTGCGTACCGTGTTTGCGACTGATGAAGCTTGGGA
GCGAGAATTGGCAGCTATCGCGTCAGACTTGGATGAAGCCAAAAAATGTAAGGGACACTTGGTTGAATCTAGCCAAAATT
TGCTAAGCATCACGGAGCAATATTTGGACTTGTCGCGCCGTTTGGAGAAGGTTTATGTGTATGCGTCAATGAAAAATGAC
CAAGACACAACAGTTGCAAAATACCAAGAATACCAAGCTAAAGCCACAGCCCTTTATGCCAAATTTAGCGAAGTTTTTGC
CTTTTATGAGTCTGAGTTGTTGCAGTTGTCGCAGGCAACTTTTGCGGATTTTGTGGCAGAAACGCCAGCCTTATCAGCTT
ACGCGCATTTCTTCGAGCAATTGTTTAAACGTCAACCACACGTCCTATCACAAGCTGAGGAGGAATTGTTGGCTGGCGCT
CAAGAAATTTTTGGGGCTGCGGGTGAAACCTTTGGTATTTTGGATAATGCCGATATGGTTTTCCCTATCGTTTCAGATGA
TGAAGGCAATCAAGTGCAGTTGACCCACGGCAATTTTATCAGTTTGTTGGAGTCTAAAAATCGTGAAGTTCGCAAAGAAG
CTTACCAAGCCATGTATGCAACCTACGAACAATTCCAGCACACTTACGCGAAAACCTTGCAGACCAATGTCAAAGTGCAC
AACTATGATGCACGCGTTCACCATTTCCAATCAGCTCGTGAGGCAGCTCTTGCGGCTAATGATATTCCAGAATCGGTATA
TGATACCTTGGTGGAAACGGTCAATGATTACTTGCCACTGTTACACCGTTATGTCGCCTTGCGCAAAAAAATCCTCAAAT
TAGATGATTTGAAAATGTATGACTTGCATACGCCTCTTTCTGAAATGGACATGAGTTTTACTTATGAGGAGGCTTTGAAG
AAGGCTGAGGAGGTTTTGGCTGTTTTTGGTGAAGATTACGCTGCGCGTGTACACCGTGCCTTCACGGAACGTTGGATTGA
TGTGCATGTTAATAAAGGCAAACGCTCAGGGGCTTATTCAGGTGGGTCTTATGACACCAATGCCTTCATGCTTTTGAACT
GGCAAGACACCTTGGACAATCTCTTTACCCTCGTTCACGAAACAGGGCACAGTTTACATTCGACTTTCACACGCGAAAAC
CAACCTTATGTTTATGGGGATTACAGCATTTTCTTGGCGGAAATTGCATCAACAACCAATGAAAATATCCTGACAGAAAC
CTTGTTAAAAGAAGTGACAGACGACAAGGCACGTTTTGCCATTTTGAATCATTATTTGGATGGTTTTAAGGGCACTATTT
TCCGTCAAACGCAGTTCGCTGAATTTGAGGACAGCATTCATAAGGCAGATCAAGCAGGTGACGTCTTGACAAGTGACTAC
CTCAACCAACTCTATGCGGAATTAAACGAGAAATACTATGGCCTTAGCAAAGAGGACAATCCTGAAATCCAATACGAATG
GGCACGGATTCCGCATTTTTACTACAATTACTACGTTTACCAATACGCAACAGGTTTTGCGGCAGCAAGCTATTTAGCAG
ATAAAGTGGTGCATGGCACTCAGGCAGACATTGACCGTTATCTTGACTATCTCAAGGAAGGTAGTTCTGATTATCCACTG
AATGTGATTGCTAAAGCAGGTGTGGACATGACCAGTCGTGATTACCTTGATGCTGCCTTCAAGATTTTTGAAGAACGTTT
GAATGAATTGGAAGCCTTGGTTGAAAAAGGGGCACATCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.167

100

0.712