Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QN080_RS01535 Genome accession   NZ_CP126309
Coordinates   365791..366261 (+) Length   156 a.a.
NCBI ID   WP_058018673.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain LyEC01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 360791..371261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN080_RS01515 argS 361049..362842 (+) 1794 WP_284184224.1 arginine--tRNA ligase -
  QN080_RS01520 mnmA 362847..363932 (+) 1086 WP_021677023.1 tRNA 2-thiouridine(34) synthase MnmA -
  QN080_RS01525 - 363977..364741 (+) 765 WP_005874493.1 exodeoxyribonuclease III -
  QN080_RS01530 - 364814..365740 (+) 927 WP_004583914.1 hydrogen peroxide-inducible genes activator -
  QN080_RS01535 ssb 365791..366261 (+) 471 WP_058018673.1 single-stranded DNA-binding protein Machinery gene
  QN080_RS01540 gldE 366279..367607 (+) 1329 WP_004583916.1 gliding motility-associated protein GldE -
  QN080_RS01545 - 367643..368239 (+) 597 WP_021677022.1 4'-phosphopantetheinyl transferase superfamily protein -
  QN080_RS01550 - 368852..369361 (-) 510 WP_234215125.1 thioredoxin domain-containing protein -
  QN080_RS01555 - 369499..370626 (-) 1128 WP_004583919.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17583.53 Da        Isoelectric Point: 5.9755

>NTDB_id=767050 QN080_RS01535 WP_058018673.1 365791..366261(+) (ssb) [Porphyromonas gingivalis strain LyEC01]
MSLNKIILIGRTGKDPEIRYFDSNSAVANFSLATSERGYKLANGTEVPERTEWHNVVAYRELAIFAEKWIKKGSLLYVEG
KIRYRTYVDNTGVRRQVTEILAEKINFFESGSSNRDESRTSQTSSSTQDTMPLASSSSVRDTTKEESSEPPSDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=767050 QN080_RS01535 WP_058018673.1 365791..366261(+) (ssb) [Porphyromonas gingivalis strain LyEC01]
ATGTCTCTGAATAAAATCATCTTGATAGGCCGTACGGGCAAGGATCCCGAGATTCGGTATTTCGATAGCAATTCGGCTGT
CGCAAACTTTTCGCTGGCTACTTCCGAGCGAGGCTACAAGCTGGCCAATGGCACTGAAGTGCCGGAGCGAACGGAATGGC
ATAATGTGGTTGCCTATCGCGAGTTGGCCATTTTTGCCGAGAAGTGGATCAAGAAAGGGAGTCTCCTATATGTCGAAGGA
AAAATCCGCTACCGCACGTATGTAGACAATACAGGGGTTCGTCGGCAAGTGACGGAAATCCTTGCCGAGAAAATCAACTT
TTTTGAAAGCGGTTCCTCCAATCGAGACGAAAGCAGAACTTCACAGACATCTTCATCGACTCAAGATACGATGCCTCTCG
CGTCTTCTTCATCCGTCCGTGATACGACAAAAGAAGAAAGCTCGGAACCTCCGTCCGACCTTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

39.355

99.359

0.391
  ssb Vibrio cholerae strain A1552

33.908

100

0.378
  ssb Neisseria gonorrhoeae MS11

47.154

78.846

0.372