Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | O4N81_RS00040 | Genome accession | NZ_CP114617 |
| Coordinates | 9264..9776 (+) | Length | 170 a.a. |
| NCBI ID | WP_002288368.1 | Uniprot ID | - |
| Organism | Enterococcus faecium strain EF0656 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3145..79324 | 9264..9776 | within | 0 |
Gene organization within MGE regions
Location: 3145..79324
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O4N81_RS00025 (O4N81_00025) | gyrB | 4242..6188 (+) | 1947 | WP_002288364.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| O4N81_RS00030 (O4N81_00030) | gyrA | 6208..8679 (+) | 2472 | WP_002321575.1 | DNA gyrase subunit A | - |
| O4N81_RS00035 (O4N81_00035) | rpsF | 8915..9214 (+) | 300 | WP_002288366.1 | 30S ribosomal protein S6 | - |
| O4N81_RS00040 (O4N81_00040) | ssb | 9264..9776 (+) | 513 | WP_002288368.1 | single-stranded DNA-binding protein | Machinery gene |
| O4N81_RS00045 (O4N81_00045) | rpsR | 9802..10038 (+) | 237 | WP_002288370.1 | 30S ribosomal protein S18 | - |
| O4N81_RS00050 (O4N81_00050) | - | 10181..12154 (+) | 1974 | WP_002288371.1 | DHH family phosphoesterase | - |
| O4N81_RS00055 (O4N81_00055) | rplI | 12160..12612 (+) | 453 | WP_002288372.1 | 50S ribosomal protein L9 | - |
| O4N81_RS00060 (O4N81_00060) | dnaB | 12886..14253 (+) | 1368 | WP_002288373.1 | replicative DNA helicase | - |
| O4N81_RS00065 (O4N81_00065) | - | 15033..16325 (+) | 1293 | WP_002288375.1 | adenylosuccinate synthase | - |
| O4N81_RS00070 (O4N81_00070) | - | 17112..17975 (+) | 864 | WP_002288377.1 | DegV family protein | - |
| O4N81_RS00075 (O4N81_00075) | - | 18104..19228 (-) | 1125 | Protein_14 | ABC-F family ATP-binding cassette domain-containing protein | - |
| O4N81_RS00080 (O4N81_00080) | - | 19283..19963 (-) | 681 | WP_001015311.1 | IS6-like element IS1216 family transposase | - |
| O4N81_RS00085 (O4N81_00085) | - | 20152..21516 (+) | 1365 | Protein_16 | ABC transporter ATP-binding protein | - |
| O4N81_RS00090 (O4N81_00090) | rpsN | 22039..22308 (+) | 270 | WP_002297316.1 | 30S ribosomal protein S14 | - |
| O4N81_RS00095 (O4N81_00095) | rpmF | 22323..22502 (+) | 180 | WP_002297318.1 | 50S ribosomal protein L32 | - |
| O4N81_RS00100 (O4N81_00100) | - | 22534..22911 (+) | 378 | WP_002297319.1 | hypothetical protein | - |
| O4N81_RS00105 (O4N81_00105) | rpmG | 22932..23081 (+) | 150 | WP_002297320.1 | 50S ribosomal protein L33 | - |
| O4N81_RS00110 (O4N81_00110) | - | 23105..24088 (+) | 984 | WP_002304819.1 | CobW family GTP-binding protein | - |
| O4N81_RS00115 (O4N81_00115) | - | 24118..24240 (+) | 123 | WP_002322279.1 | putative metal homeostasis protein | - |
| O4N81_RS00120 (O4N81_00120) | - | 24258..25781 (+) | 1524 | WP_269528370.1 | zinc ABC transporter substrate-binding protein AdcA | - |
| O4N81_RS00125 (O4N81_00125) | - | 25805..26044 (+) | 240 | WP_002304820.1 | helix-turn-helix domain-containing protein | - |
| O4N81_RS00130 (O4N81_00130) | - | 26237..26698 (-) | 462 | WP_002297325.1 | IS30 family transposase | - |
| O4N81_RS00135 (O4N81_00135) | - | 26893..27111 (-) | 219 | WP_002317220.1 | helix-turn-helix domain-containing protein | - |
| O4N81_RS00140 (O4N81_00140) | - | 27229..28845 (+) | 1617 | WP_269528371.1 | GTP-binding protein | - |
| O4N81_RS00145 (O4N81_00145) | - | 29086..30426 (-) | 1341 | Protein_28 | ISL3 family transposase | - |
| O4N81_RS15175 | - | 30864..31010 (-) | 147 | WP_138816292.1 | transposase family protein | - |
| O4N81_RS15275 | - | 31049..31243 (-) | 195 | WP_002297332.1 | IS3 family transposase | - |
| O4N81_RS00150 (O4N81_00150) | - | 31153..31485 (-) | 333 | WP_002311665.1 | helix-turn-helix domain-containing protein | - |
| O4N81_RS00155 (O4N81_00155) | - | 31999..32190 (-) | 192 | WP_002304825.1 | helix-turn-helix domain-containing protein | - |
| O4N81_RS00160 (O4N81_00160) | - | 32284..32670 (-) | 387 | WP_002297333.1 | sigma-70 family RNA polymerase sigma factor | - |
| O4N81_RS00165 (O4N81_00165) | - | 33364..34569 (+) | 1206 | WP_002297334.1 | YSIRK-targeted surface antigen transcriptional regulator | - |
| O4N81_RS00170 (O4N81_00170) | - | 34586..35020 (+) | 435 | WP_002332818.1 | DUF7006 family protein | - |
| O4N81_RS00175 (O4N81_00175) | esp | 35637..42056 (+) | 6420 | WP_269528372.1 | repetitive surface protein Esp | - |
| O4N81_RS00180 (O4N81_00180) | - | 42223..43518 (-) | 1296 | WP_002297218.1 | ISL3-like element ISEfa11 family transposase | - |
| O4N81_RS00185 (O4N81_00185) | - | 43712..45043 (+) | 1332 | WP_010729817.1 | FAD/NAD(P)-binding oxidoreductase | - |
| O4N81_RS00190 (O4N81_00190) | - | 45030..45989 (-) | 960 | WP_002303350.1 | IS30 family transposase | - |
| O4N81_RS00195 (O4N81_00195) | - | 46233..47684 (+) | 1452 | WP_002297338.1 | glucosaminidase domain-containing protein | - |
| O4N81_RS00200 (O4N81_00200) | - | 48033..48665 (+) | 633 | WP_010729820.1 | hypothetical protein | - |
| O4N81_RS00205 (O4N81_00205) | - | 49253..50692 (+) | 1440 | WP_002297342.1 | MFS transporter | - |
| O4N81_RS00210 (O4N81_00210) | - | 50987..51205 (+) | 219 | Protein_43 | zinc ribbon domain-containing protein | - |
| O4N81_RS00215 (O4N81_00215) | - | 51454..51669 (+) | 216 | WP_002297343.1 | hypothetical protein | - |
| O4N81_RS00220 (O4N81_00220) | - | 51906..52142 (-) | 237 | Protein_45 | transposase | - |
| O4N81_RS00225 (O4N81_00225) | - | 52329..53240 (-) | 912 | WP_002297345.1 | conjugal transfer protein | - |
| O4N81_RS00230 (O4N81_00230) | - | 53259..54263 (-) | 1005 | WP_002297346.1 | lysozyme family protein | - |
| O4N81_RS00235 (O4N81_00235) | - | 54260..56383 (-) | 2124 | WP_002297347.1 | FUSC family protein | - |
| O4N81_RS00240 (O4N81_00240) | - | 56388..58835 (-) | 2448 | WP_010729283.1 | ATP-binding protein | - |
| O4N81_RS00245 (O4N81_00245) | - | 58822..59211 (-) | 390 | WP_002297349.1 | conjugal transfer protein | - |
| O4N81_RS00250 (O4N81_00250) | - | 59271..59774 (-) | 504 | WP_002297350.1 | antirestriction protein ArdA | - |
| O4N81_RS00255 (O4N81_00255) | - | 59787..60011 (-) | 225 | WP_033658092.1 | hypothetical protein | - |
| O4N81_RS00260 (O4N81_00260) | ltrA | 60115..62025 (-) | 1911 | WP_002286940.1 | group II intron reverse transcriptase/maturase | - |
| O4N81_RS00265 (O4N81_00265) | - | 62771..62908 (-) | 138 | WP_002317225.1 | DUF3789 domain-containing protein | - |
| O4N81_RS00270 (O4N81_00270) | mobT | 62905..64089 (-) | 1185 | WP_002297353.1 | MobT family relaxase | - |
| O4N81_RS00275 (O4N81_00275) | - | 64348..64638 (-) | 291 | WP_002297354.1 | hypothetical protein | - |
| O4N81_RS00280 (O4N81_00280) | dcm | 64628..65770 (-) | 1143 | Protein_57 | DNA (cytosine-5-)-methyltransferase | - |
| O4N81_RS00285 (O4N81_00285) | - | 65846..66010 (-) | 165 | WP_002297357.1 | hypothetical protein | - |
| O4N81_RS00290 (O4N81_00290) | - | 66003..66677 (-) | 675 | WP_002297358.1 | zeta toxin family protein | - |
| O4N81_RS00295 (O4N81_00295) | - | 66755..68095 (-) | 1341 | WP_010729284.1 | FtsK/SpoIIIE domain-containing protein | - |
| O4N81_RS00300 (O4N81_00300) | - | 68178..68513 (-) | 336 | WP_002297364.1 | hypothetical protein | - |
| O4N81_RS00305 (O4N81_00305) | - | 68523..68897 (-) | 375 | WP_002297365.1 | YdcP family protein | - |
| O4N81_RS00310 (O4N81_00310) | - | 68910..69224 (-) | 315 | WP_002297366.1 | YdcP family protein | - |
| O4N81_RS00315 (O4N81_00315) | fss3 | 69337..72564 (-) | 3228 | WP_010729821.1 | fibrinogen-binding MSCRAMM adhesin Fss3 | - |
| O4N81_RS00320 (O4N81_00320) | - | 73421..73675 (+) | 255 | WP_002303696.1 | hypothetical protein | - |
| O4N81_RS00325 (O4N81_00325) | - | 73839..74756 (+) | 918 | WP_002287502.1 | ATP-binding cassette domain-containing protein | - |
| O4N81_RS00330 (O4N81_00330) | - | 74749..75531 (+) | 783 | WP_002303697.1 | ABC transporter permease subunit | - |
| O4N81_RS00335 (O4N81_00335) | - | 75532..76212 (+) | 681 | WP_002303698.1 | response regulator transcription factor | - |
| O4N81_RS00340 (O4N81_00340) | - | 76205..77101 (+) | 897 | WP_002303699.1 | sensor histidine kinase | - |
| O4N81_RS00345 (O4N81_00345) | - | 77313..79235 (+) | 1923 | WP_002303700.1 | BglG family transcription antiterminator | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18451.99 Da Isoelectric Point: 4.6742
>NTDB_id=766862 O4N81_RS00040 WP_002288368.1 9264..9776(+) (ssb) [Enterococcus faecium strain EF0656]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF
Nucleotide
Download Length: 513 bp
>NTDB_id=766862 O4N81_RS00040 WP_002288368.1 9264..9776(+) (ssb) [Enterococcus faecium strain EF0656]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.322 |
100 |
0.618 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.983 |
100 |
0.6 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
62.264 |
62.353 |
0.388 |