Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   O4M77_RS12990 Genome accession   NZ_CP114606
Coordinates   2732081..2732719 (-) Length   212 a.a.
NCBI ID   WP_005233586.1    Uniprot ID   A0A2L0I1Q6
Organism   Acinetobacter sp. YWS30-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2727081..2737719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4M77_RS12970 (O4M77_12960) aroK 2728083..2728619 (-) 537 WP_005233593.1 shikimate kinase AroK -
  O4M77_RS12975 (O4M77_12965) pilQ 2728656..2730779 (-) 2124 WP_323714112.1 type IV pilus secretin PilQ family protein Machinery gene
  O4M77_RS12980 (O4M77_12970) pilP 2730841..2731368 (-) 528 WP_323713546.1 pilus assembly protein PilP Machinery gene
  O4M77_RS12985 (O4M77_12975) comO 2731368..2732084 (-) 717 WP_180013423.1 type 4a pilus biogenesis protein PilO Machinery gene
  O4M77_RS12990 (O4M77_12980) comN 2732081..2732719 (-) 639 WP_005233586.1 PilN domain-containing protein Machinery gene
  O4M77_RS12995 (O4M77_12985) pilM 2732719..2733777 (-) 1059 WP_180002742.1 pilus assembly protein PilM Machinery gene
  O4M77_RS13000 (O4M77_12990) ponA 2733944..2736472 (+) 2529 WP_180033724.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23734.91 Da        Isoelectric Point: 4.7909

>NTDB_id=766848 O4M77_RS12990 WP_005233586.1 2732081..2732719(-) (comN) [Acinetobacter sp. YWS30-1]
MAKINLLPWRDELRIKRNNEFVAICAGALFLGLAAAGSTWFYYDQKLQDQEQANQLVVSTNQNLDVQLKALDGLQDQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSNMYITKFQRTGDKFTIEGKAESPNTVAELLRNLEASTWYRNAFMNAFLV
AEEPKDKAPSSVIPRVEESYGSFTVTVDLDQIAEPTLKEGQTPATTTAEASS

Nucleotide


Download         Length: 639 bp        

>NTDB_id=766848 O4M77_RS12990 WP_005233586.1 2732081..2732719(-) (comN) [Acinetobacter sp. YWS30-1]
ATGGCAAAGATTAACTTACTCCCTTGGCGCGATGAGCTAAGAATTAAAAGAAATAATGAATTTGTAGCGATTTGCGCAGG
GGCACTTTTTCTAGGATTGGCAGCAGCAGGTTCAACCTGGTTCTATTACGATCAAAAACTTCAGGATCAGGAACAGGCCA
ATCAGCTGGTGGTCAGTACTAACCAGAATCTGGATGTACAGCTGAAAGCATTGGATGGTTTACAAGACCAGCGTAATGCA
ATTGTTGAACGTATGAAGCTGATTCAGGGTTTACAGACTCAACGGCCGATCGCAGTTCACCTGATTGATGAAATTGTACG
GGTCACACCAAGCAATATGTACATTACCAAATTCCAGCGTACCGGCGATAAATTCACCATTGAAGGTAAGGCGGAAAGTC
CGAATACAGTGGCTGAATTGCTACGTAATCTGGAGGCTTCTACCTGGTATCGTAATGCATTTATGAATGCTTTCCTGGTT
GCTGAAGAACCAAAAGATAAAGCGCCATCATCAGTGATTCCTCGAGTGGAAGAATCTTATGGCAGCTTTACGGTCACGGT
TGATCTGGATCAAATCGCTGAGCCAACACTTAAAGAAGGACAAACACCAGCCACAACTACAGCGGAGGCATCATCATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0I1Q6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

70.531

97.642

0.689
  pilN Acinetobacter baumannii D1279779

68.293

96.698

0.66