Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   O4M77_RS12975 Genome accession   NZ_CP114606
Coordinates   2728656..2730779 (-) Length   707 a.a.
NCBI ID   WP_323714112.1    Uniprot ID   A0AAU0NHK7
Organism   Acinetobacter sp. YWS30-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2723656..2735779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4M77_RS12960 (O4M77_12950) - 2726111..2726962 (-) 852 WP_180016593.1 hypothetical protein -
  O4M77_RS12965 (O4M77_12955) aroB 2726975..2728054 (-) 1080 WP_180013427.1 3-dehydroquinate synthase -
  O4M77_RS12970 (O4M77_12960) aroK 2728083..2728619 (-) 537 WP_005233593.1 shikimate kinase AroK -
  O4M77_RS12975 (O4M77_12965) pilQ 2728656..2730779 (-) 2124 WP_323714112.1 type IV pilus secretin PilQ family protein Machinery gene
  O4M77_RS12980 (O4M77_12970) pilP 2730841..2731368 (-) 528 WP_323713546.1 pilus assembly protein PilP Machinery gene
  O4M77_RS12985 (O4M77_12975) comO 2731368..2732084 (-) 717 WP_180013423.1 type 4a pilus biogenesis protein PilO Machinery gene
  O4M77_RS12990 (O4M77_12980) comN 2732081..2732719 (-) 639 WP_005233586.1 PilN domain-containing protein Machinery gene
  O4M77_RS12995 (O4M77_12985) pilM 2732719..2733777 (-) 1059 WP_180002742.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 707 a.a.        Molecular weight: 76776.86 Da        Isoelectric Point: 4.9919

>NTDB_id=766845 O4M77_RS12975 WP_323714112.1 2728656..2730779(-) (pilQ) [Acinetobacter sp. YWS30-1]
MNHVFRQFSMGAVAIAVMQVASAQVSMTNVVPMQIPGQGTEIRVMFNGLPPQPQAYQLESPSRLILDFNEAQQNLKQSSI
PVATAEASSVDVSSDAQRSRLTVNLANAGAFTTRVEGNTFILKINSATPVAIAQPVQQQVAQGITNIGFQRGAQGEGLVV
IDLAGQNTPVDVQQQGTKVIVRTLGSKIPAHLTRRLNVNDFATPVSTVDAVNQNGSGVITIQSTESYEYMAFQTDNKLTI
SLKRPEVKGPLRPKSVAYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVPWDQALDIVLKTKNLD
KRRNGNVIWIAPVAELIKAEEEEAKALKQSVALAPIQTEYMQLSYAKAADIEKLITQNKSASGSGNSSNSTNNDDKESLL
SSRGSISIDARTNTIIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRATTDFTKEMGVKWGILSQGITNNNHLLVGGS
DTTLWDLREPEFDSERGGWTYEIQRPDNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPKVLTAD
KQKATVASGSQIPYQSAEGGGANAVSTTEFIDATLSLDVTPSITPDGKVQMELNITSDSPGNPTPTGQLTINKNQINTNV
LVDNGETVVLGGIFEQETRNAQTKVPFLGDLPYLGRLFRKDVKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2124 bp        

>NTDB_id=766845 O4M77_RS12975 WP_323714112.1 2728656..2730779(-) (pilQ) [Acinetobacter sp. YWS30-1]
ATGAATCATGTGTTTCGTCAGTTTTCTATGGGGGCTGTCGCGATTGCTGTGATGCAAGTAGCGAGTGCGCAAGTTTCAAT
GACCAATGTAGTGCCAATGCAAATTCCTGGACAGGGAACTGAAATCCGGGTGATGTTTAATGGCTTGCCACCTCAGCCTC
AAGCTTATCAGCTTGAATCTCCATCACGCCTGATTCTGGATTTTAATGAGGCCCAACAAAATCTAAAACAGTCTAGTATT
CCAGTCGCAACTGCTGAAGCCAGTTCAGTGGATGTTAGCTCAGATGCACAGCGTTCTCGACTGACGGTGAATCTCGCTAA
TGCAGGTGCATTTACGACGCGTGTGGAAGGCAATACCTTTATTTTAAAAATTAATTCTGCCACTCCAGTCGCTATTGCTC
AGCCTGTACAACAGCAGGTCGCTCAGGGGATTACTAATATTGGTTTCCAGCGGGGTGCGCAAGGTGAAGGACTGGTGGTA
ATTGATCTGGCAGGTCAGAACACACCAGTCGATGTACAGCAGCAGGGAACCAAAGTGATTGTGCGGACTCTGGGCTCCAA
GATTCCGGCACATTTGACCCGACGTTTGAATGTGAATGATTTTGCCACGCCTGTTTCAACCGTAGATGCAGTCAATCAAA
ATGGTTCAGGTGTAATTACTATTCAGTCTACAGAAAGTTATGAATATATGGCTTTCCAGACGGATAATAAGCTGACGATT
AGTTTGAAGCGTCCAGAAGTTAAGGGTCCATTACGTCCTAAATCAGTCGCTTATACAGGCAAGAAAATTTCCCTCGATTT
CCAAGATATTGAAGTTCGTCGAGTTCTACAATTATTAGCCGATTTTACCGATATCAATATGGTTGCTGCAGATAGCGTAC
AGGGTAATATTACCTTACGCCTCAAAGAAGTGCCTTGGGATCAGGCTTTAGATATTGTATTAAAAACCAAAAATCTGGAT
AAACGTCGTAATGGTAATGTGATCTGGATTGCACCAGTGGCAGAACTAATTAAGGCCGAAGAAGAAGAAGCTAAGGCTTT
AAAACAAAGCGTTGCACTTGCACCGATTCAAACTGAATATATGCAGCTCAGTTATGCAAAAGCAGCAGATATTGAAAAAC
TGATTACTCAAAATAAAAGTGCATCAGGATCAGGTAATTCAAGTAATAGTACTAATAACGATGATAAAGAAAGTTTATTA
AGTTCACGTGGCTCTATCTCTATTGATGCTCGTACCAATACCATTATTGTGAATGATACCCAGCCATTTATTGATAAAAT
TCGCAATATGGTGGATCTGCTGGATGTACAGGTAAAGCAGGTGATGGTAGAGGCGCGTATTGTCCGTGCAACCACTGACT
TTACTAAAGAAATGGGGGTGAAGTGGGGGATTCTATCTCAAGGGATTACCAATAATAATCACCTTCTCGTTGGTGGTAGT
GATACGACTCTTTGGGATTTGAGGGAGCCTGAATTTGATAGTGAAAGAGGGGGGTGGACCTATGAAATTCAGAGACCGGA
TAACCTTAATGTGGATCTAGGTGTAACTAGTCCAGGAGCAAGTCGCATCGCCTTTGGTTTAATTAGCCTATCAGATTTTA
TGCTGGATCTTGAACTTTCTGCGCTACAGGCAGATGGTTATGGTGAAGTAATTTCTACACCAAAAGTGCTCACTGCTGAC
AAGCAAAAAGCGACTGTGGCATCTGGTTCCCAAATTCCTTATCAGTCCGCAGAAGGTGGTGGTGCTAATGCAGTTTCAAC
TACTGAATTTATTGATGCAACTTTAAGTTTAGATGTAACGCCAAGTATTACACCAGATGGTAAAGTGCAGATGGAGTTGA
ATATTACCAGTGACTCACCAGGAAATCCGACACCTACTGGACAGTTAACGATTAATAAAAACCAGATCAATACTAATGTA
CTGGTTGATAATGGTGAAACAGTAGTACTTGGTGGTATTTTTGAGCAAGAAACTCGAAATGCACAAACTAAAGTTCCTTT
CTTGGGCGATCTACCTTATTTAGGTCGTTTATTCCGTAAAGATGTAAAATCGGATAACAAACGTGAGCTACTGATTTTTG
TTACACCTCGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(541-699)

Secretin and TonB N terminus short domain (STN)

(290-332)

AMIN domain (AMIN)

(40-122)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-440)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

73.352

100

0.755
  pilQ Acinetobacter baumannii strain A118

73.214

100

0.754
  comQ Acinetobacter baylyi ADP1

70.432

100

0.714
  pilQ Pseudomonas aeruginosa PAK

41.81

98.444

0.412
  pilQ Legionella pneumophila strain ERS1305867

37.838

99.434

0.376
  pilQ Legionella pneumophila strain Lp02

37.838

99.434

0.376