Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   O4J62_RS00930 Genome accession   NZ_CP114601
Coordinates   213064..214497 (-) Length   477 a.a.
NCBI ID   WP_178318308.1    Uniprot ID   -
Organism   Acinetobacter towneri strain TT1-3_T     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 208064..219497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4J62_RS00915 (O4J62_00915) lptG 209063..210133 (+) 1071 WP_004975683.1 LPS export ABC transporter permease LptG -
  O4J62_RS00920 (O4J62_00920) gpmI 210279..211826 (+) 1548 WP_004975686.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  O4J62_RS00925 (O4J62_00925) - 211851..213014 (+) 1164 WP_004975690.1 S41 family peptidase -
  O4J62_RS00930 (O4J62_00930) pilR 213064..214497 (-) 1434 WP_178318308.1 sigma-54-dependent transcriptional regulator Regulator
  O4J62_RS00935 (O4J62_00935) pilS 214567..216129 (-) 1563 WP_323712643.1 sensor histidine kinase Regulator
  O4J62_RS00940 (O4J62_00940) - 216180..216815 (-) 636 WP_004975702.1 response regulator -
  O4J62_RS00945 (O4J62_00945) - 217031..218122 (+) 1092 WP_131260992.1 serine hydrolase -
  O4J62_RS00950 (O4J62_00950) thrC 218243..219382 (-) 1140 WP_104852917.1 threonine synthase -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53731.62 Da        Isoelectric Point: 5.8670

>NTDB_id=766786 O4J62_RS00930 WP_178318308.1 213064..214497(-) (pilR) [Acinetobacter towneri strain TT1-3_T]
MHAVQPLVLLVDDEEDLCTLMQMTLARMGIQTHVAYRLVQAKQLLAEHQYDACLTDLNLPDGNGLQLVEWISEQYPNVPV
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQIHLQQLLEKALNKPFDTTDHHSQDQLEYKMLIGQSLPIQQLRSTIKKIAR
SQAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLIQSAHGGSLFLD
EIAELPLSMQVKLLRAVQEKRIRPVGSDSEIDVDFRVISASHQDLESLVQQGRFRQDLFFRIHVMDLVLPALRERGQDIL
LLADHFIQKVAQEWDIPAKQLTPRAQQFLLEQYYPGNVRELRNIIERAITLSDDDVIDLKHLQTAPLRQFSMSNTATTES
QPTAETPQQIVTDVLLTGRKLPEEGLEAYLEKVEKDILLNALHLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEDE

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=766786 O4J62_RS00930 WP_178318308.1 213064..214497(-) (pilR) [Acinetobacter towneri strain TT1-3_T]
ATGCACGCTGTTCAACCTTTGGTTTTATTGGTCGATGACGAAGAAGACCTTTGTACCCTCATGCAGATGACTTTGGCACG
TATGGGGATTCAAACCCATGTCGCGTATCGTTTAGTGCAAGCCAAGCAGTTATTGGCAGAACATCAGTACGATGCTTGCT
TAACCGACTTAAACCTGCCCGATGGCAATGGCTTGCAACTGGTTGAATGGATTTCCGAACAATATCCGAATGTGCCTGTT
GCCGTATTGACCGCTTACGGCAATATGGATATTGCGATTGCTGCTTTAAAAGCAGGTGCATTTGACTTTGTCAGCAAGCC
TGTCAATCAAATACATTTACAGCAACTCCTTGAAAAAGCACTGAATAAACCTTTCGACACCACCGATCATCACAGCCAAG
ATCAGCTTGAATATAAAATGTTGATTGGGCAGTCTTTGCCTATTCAACAATTGCGCAGCACCATCAAAAAAATTGCGCGC
TCGCAAGCGCCTGTATTTATTACAGGCGAATCGGGTACGGGGAAAGAAGTTGTCGCCAATTTGGTTCACCGTTTAAGTAA
CCGCAACGAAGGACCATTTATTGCAATTAACTGTGGTGCAATCCCCACCGAACTCATGGAAAGCGAGCTATTTGGACACA
AAAAAGGTAGCTTTACAGGAGCGACTCAAGACAAACAAGGTCTGATTCAATCTGCACATGGTGGCAGCTTATTTTTAGAT
GAAATTGCCGAACTGCCACTGAGCATGCAAGTCAAACTGCTGCGTGCCGTTCAGGAAAAGCGCATCCGTCCTGTGGGTTC
AGATAGTGAAATTGATGTCGATTTTCGTGTGATCAGCGCCAGTCATCAGGACTTAGAAAGTTTGGTTCAGCAAGGACGTT
TCCGTCAGGATTTATTCTTCCGTATTCACGTGATGGATTTGGTCTTGCCTGCCTTGCGTGAACGTGGACAAGATATTCTG
TTATTGGCAGACCACTTCATTCAAAAAGTTGCACAAGAATGGGACATTCCTGCCAAACAACTGACACCTCGTGCCCAGCA
ATTTTTATTAGAACAGTACTATCCGGGTAATGTGCGTGAGTTACGCAATATTATTGAACGTGCCATTACCCTGAGTGATG
ATGATGTTATTGATCTCAAACACTTACAAACCGCACCCTTGCGCCAATTCAGTATGAGCAATACAGCAACCACTGAATCA
CAACCTACAGCAGAAACACCACAGCAGATCGTGACAGATGTATTGCTGACAGGACGCAAACTGCCTGAAGAAGGTTTAGA
AGCCTACTTGGAAAAAGTAGAAAAAGACATTTTACTGAATGCGCTGCACCTGACCCACTGGAACCGTACGTTGGCAGCAA
AAAAATTGGGCATGTCTTTCCGTTCTTTGCGCTATCGTCTGAAAAAGTTTGGATTAGATACTGAAGATGAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(141-307)

Bacterial regulatory protein, Fis family (HTH_8)

(430-470)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

76.827

100

0.771
  pilR Pseudomonas aeruginosa PAK

49.785

97.694

0.486