Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   O4J62_RS00935 Genome accession   NZ_CP114601
Coordinates   214567..216129 (-) Length   520 a.a.
NCBI ID   WP_323712643.1    Uniprot ID   -
Organism   Acinetobacter towneri strain TT1-3_T     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 209567..221129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4J62_RS00920 (O4J62_00920) gpmI 210279..211826 (+) 1548 WP_004975686.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  O4J62_RS00925 (O4J62_00925) - 211851..213014 (+) 1164 WP_004975690.1 S41 family peptidase -
  O4J62_RS00930 (O4J62_00930) pilR 213064..214497 (-) 1434 WP_178318308.1 sigma-54-dependent transcriptional regulator Regulator
  O4J62_RS00935 (O4J62_00935) pilS 214567..216129 (-) 1563 WP_323712643.1 sensor histidine kinase Regulator
  O4J62_RS00940 (O4J62_00940) - 216180..216815 (-) 636 WP_004975702.1 response regulator -
  O4J62_RS00945 (O4J62_00945) - 217031..218122 (+) 1092 WP_131260992.1 serine hydrolase -
  O4J62_RS00950 (O4J62_00950) thrC 218243..219382 (-) 1140 WP_104852917.1 threonine synthase -
  O4J62_RS00955 (O4J62_00955) - 219440..220744 (-) 1305 WP_004975708.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 59247.65 Da        Isoelectric Point: 7.0488

>NTDB_id=766787 O4J62_RS00935 WP_323712643.1 214567..216129(-) (pilS) [Acinetobacter towneri strain TT1-3_T]
MPDLKQYSELNQYHLGMWYGTYRLLIAFCLLLITLLTFQQLGTQYQHPGLYLYTLVCYFIFSCLQLISYKYIPFKSTHQL
TLFFAVDIIALSSLTFASDGPNLYLSLLFAITIFAASLSLQKRKALAITLIAMIMVIYQHFVGSLLDFSSLNNIGQSALL
AFLFWVVYGSGRIAVRRFQILENLNFSQSLELNRLQNINRYILEQTEMGYLVLDENCHVVLSNPAACHLLGIHPKYAHAT
YPLYKIQPDLFDLFKFDQLQDGEKFQFESQLSHFHVHIQVQKLKVPHQTLTLLALQDGRKINQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANNLFTGSDAIQQQLLSDMISKQATRIDKIIHDTLSMVKNKQTTPVAIQLNQFLPQFIQEDLPDAAS
QIQLTLTEPLSIQFDESQFRQVLINLIRNAIRHNTAQQPIEITAYPQATYIYIDVRDFGAGVASQDLLYLFQPFFSTEIN
GTGLGLYLSHSFCEANQAKLSYVEQEQGACFRMKCLRAIE

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=766787 O4J62_RS00935 WP_323712643.1 214567..216129(-) (pilS) [Acinetobacter towneri strain TT1-3_T]
ATGCCAGATTTAAAACAATATTCTGAGTTAAATCAGTATCATCTTGGCATGTGGTATGGTACTTACCGACTGCTGATTGC
CTTTTGCTTGCTGCTGATTACCCTGCTCACCTTTCAGCAGCTTGGCACACAATATCAGCACCCGGGTTTATATCTGTATA
CCTTGGTCTGCTATTTTATTTTTAGCTGCCTACAACTGATCAGCTATAAATACATTCCCTTTAAAAGCACGCATCAACTG
ACCCTGTTTTTTGCAGTCGATATTATCGCGCTCAGTAGCCTGACTTTTGCCAGCGATGGCCCTAATTTATATTTAAGTCT
GCTGTTTGCGATCACGATTTTTGCAGCATCACTCTCGCTGCAAAAGCGTAAAGCCTTAGCCATTACCCTCATCGCGATGA
TTATGGTGATTTACCAACACTTTGTTGGGAGTTTGCTGGACTTTTCATCGCTAAATAATATTGGTCAAAGTGCGCTATTG
GCATTTTTATTTTGGGTGGTTTATGGCAGTGGACGTATTGCAGTACGGCGTTTCCAAATTTTAGAAAATCTAAACTTTTC
ACAGTCGTTGGAATTAAACCGCCTACAAAATATTAACCGTTATATTTTAGAACAAACCGAAATGGGCTATTTGGTTTTAG
ATGAAAATTGCCATGTCGTCCTCAGTAACCCTGCAGCCTGTCATCTGTTGGGGATTCATCCTAAATATGCGCACGCGACC
TATCCATTGTATAAAATTCAGCCCGATTTATTTGATCTGTTCAAATTTGATCAATTGCAAGATGGAGAAAAATTTCAATT
CGAGTCACAACTGAGTCATTTCCATGTGCATATTCAGGTGCAAAAACTCAAAGTGCCACATCAAACGCTGACTTTATTGG
CGCTGCAGGATGGACGTAAAATCAATCAGCAAGTCCAGCAACTCAAATTAGCCGCCTTAGGACAACTCTCTGCCAGTATT
GCGCACGAAATTCGTAACCCTTTGGCAGCCATTGTACAAGCCAACAATTTATTTACAGGCAGTGATGCTATACAACAGCA
ATTGCTGTCCGACATGATCAGCAAACAAGCGACACGGATTGATAAAATTATTCATGACACGCTGAGCATGGTCAAAAATA
AGCAAACCACGCCTGTCGCGATTCAGCTCAATCAATTTTTGCCGCAATTCATTCAGGAAGATTTACCTGATGCAGCGAGT
CAAATTCAACTTACACTGACCGAACCACTGAGCATCCAGTTTGATGAATCGCAGTTTCGCCAAGTGCTGATTAACCTGAT
TCGTAACGCCATTCGGCACAATACTGCACAACAACCTATTGAGATTACGGCCTATCCGCAAGCAACTTATATTTATATTG
ATGTGCGGGATTTTGGTGCAGGTGTCGCCAGTCAAGATCTCCTCTATCTGTTCCAGCCATTTTTCAGTACCGAAATCAAT
GGAACTGGTTTAGGATTGTATCTATCGCATAGTTTTTGCGAGGCGAATCAAGCCAAGCTGAGCTATGTAGAACAAGAACA
AGGCGCATGTTTCAGGATGAAATGTCTACGTGCCATTGAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-514)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.01

97.115

0.573