Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   QNH30_RS08490 Genome accession   NZ_CP126082
Coordinates   1626517..1628565 (+) Length   682 a.a.
NCBI ID   WP_153940051.1    Uniprot ID   -
Organism   Bacillus subtilis strain C1_13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1621517..1633565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH30_RS08460 (QNH30_08460) spoVM 1622153..1622233 (+) 81 WP_003221545.1 stage V sporulation protein SpoVM -
  QNH30_RS08465 (QNH30_08465) rpmB 1622306..1622494 (-) 189 WP_003221548.1 50S ribosomal protein L28 -
  QNH30_RS08470 (QNH30_08470) yloU 1622771..1623133 (+) 363 WP_003232054.1 Asp23/Gls24 family envelope stress response protein -
  QNH30_RS08475 (QNH30_08475) yloV 1623149..1624810 (+) 1662 WP_041850840.1 DAK2 domain-containing protein -
  QNH30_RS08480 (QNH30_08480) sdaAB 1624949..1625611 (+) 663 WP_041850839.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  QNH30_RS08485 (QNH30_08485) sdaAA 1625637..1626539 (+) 903 WP_003232049.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  QNH30_RS08490 (QNH30_08490) recG 1626517..1628565 (+) 2049 WP_153940051.1 ATP-dependent DNA helicase RecG Machinery gene
  QNH30_RS08495 (QNH30_08495) fapR 1628674..1629240 (+) 567 WP_003232044.1 transcription factor FapR -
  QNH30_RS08500 (QNH30_08500) plsX 1629254..1630255 (+) 1002 WP_003232041.1 phosphate acyltransferase PlsX -
  QNH30_RS08505 (QNH30_08505) fabD 1630274..1631227 (+) 954 WP_041850838.1 ACP S-malonyltransferase -
  QNH30_RS08510 (QNH30_08510) fabG 1631220..1631960 (+) 741 WP_003232035.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  QNH30_RS08515 (QNH30_08515) acpP 1632044..1632277 (+) 234 WP_003154310.1 acyl carrier protein -
  QNH30_RS08520 (QNH30_08520) rncS 1632417..1633166 (+) 750 WP_003232030.1 ribonuclease III -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78120.73 Da        Isoelectric Point: 7.2740

>NTDB_id=766503 QNH30_RS08490 WP_153940051.1 1626517..1628565(+) (recG) [Bacillus subtilis strain C1_13]
MKQHQQTSIANIKGIGPETEKTLHELGIYDISDLLNYFPYRYDDYELRDLEEVKHDERVTVEGKVHSEPSLTYYGKKRNR
LTFRLLVGHYLITAVCFNRPYLKKKLSLGSVVTVSGKWDKHRQTISVQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFI
QQALTQYADSLPDPLPEKLRKSYKLPDYYQALKAMHQPETREALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQGIRQR
FSNEELMRFIKSLPFPLTNAQSRVLREITADMSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ
HADSLVSLFEKWDVSVALLTSSVKGKRRKELLERLAAGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLLN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEESD
KLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGEHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARQDAANLVASDAFWKEPEYAVLRDELLKSGVMDGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=766503 QNH30_RS08490 WP_153940051.1 1626517..1628565(+) (recG) [Bacillus subtilis strain C1_13]
GTGAAACAACATCAGCAAACTAGTATAGCTAACATTAAGGGTATTGGGCCGGAAACAGAAAAAACATTACACGAACTCGG
TATTTATGACATTTCTGATCTTCTGAATTATTTCCCTTATCGCTATGATGACTACGAGCTGAGGGATTTAGAAGAAGTAA
AGCATGATGAAAGAGTCACAGTCGAAGGGAAGGTTCATTCAGAGCCTTCTCTTACCTATTACGGAAAAAAACGAAACAGG
CTGACATTCAGGCTTCTGGTCGGCCACTATTTAATTACAGCCGTATGTTTTAACCGGCCTTATTTGAAGAAGAAGCTTTC
GCTCGGCTCTGTGGTGACAGTTTCAGGTAAATGGGACAAGCACCGCCAAACCATCTCTGTTCAGGAGTTGAAAAACGGGC
CGCATCAAGAAGACAAAAGCATTGAGCCAGTGTATTCTGTGAAAGAAAATGTTACCGTCAAAATGATGAGGCGCTTTATT
CAGCAGGCGCTGACCCAATATGCAGACTCACTTCCTGATCCTCTTCCGGAAAAGCTAAGAAAAAGCTATAAACTGCCTGA
CTATTATCAGGCGTTAAAAGCAATGCACCAGCCTGAAACAAGGGAAGCATTAAAGCTTGCCAGACGGCGGTTTGTTTATG
AAGAATTTTTGTTGTTTCAGTTGAAAATGCAGGCGTTCCGAAAGGCGGAAAGAGAGCAGACACAAGGGATACGGCAACGT
TTTTCAAACGAAGAACTTATGAGATTTATCAAAAGCCTCCCGTTTCCCCTCACAAACGCCCAGTCACGCGTTCTTCGCGA
AATAACAGCAGACATGTCTTCTCCATACAGAATGAATCGTCTACTTCAAGGGGACGTTGGATCAGGAAAAACGGCAGTCG
CCGCCATTGCACTGTATGCCGCGATCCTATCCGGATACCAAGGAGCGCTCATGGTGCCGACAGAAATTCTGGCCGAGCAG
CATGCTGATTCGCTCGTTTCGCTATTTGAAAAATGGGACGTCAGCGTTGCTCTTTTGACAAGCTCTGTTAAAGGGAAGCG
GCGAAAAGAACTGCTTGAGCGTCTTGCGGCGGGTGAGATTGATATTCTTGTAGGAACCCACGCTTTAATCCAAGACGAGG
TGGAGTTTAAGGCGCTGAGTCTCGTTATTACTGATGAACAGCACAGATTTGGAGTTGAGCAGCGCAAAAAGCTTCTGAAC
AAAGGGCAGGATCCCGATGTTCTCTTTATGACAGCCACTCCAATCCCAAGAACGTTAGCGATCACAGTGTTCGGTGAAAT
GGATGTATCTGTCATCGATGAGATGCCGGCAGGACGAAAGAGAATCGAAACCTATTGGGTAAAACATGACATGCTGGATC
GTATATTGGCATTTGTCGAAAAAGAATTAAAGCAAGGCAGGCAGGCTTATATCATCTGTCCGCTGATTGAAGAATCAGAC
AAGCTTGATGTGCAAAACGCCATTGACGTGTACAATATGCTTTCTGATATTTTTCGGGGAAAATGGAATGTCGGCCTTAT
GCATGGAAAGCTGCATTCCGATGAAAAAGACCAGGTCATGAGAGAATTCAGCGCAAATCACTGTCAAATTCTCGTATCAA
CCACTGTTGTGGAGGTTGGCGTGAATGTTCCGAATGCAACGATTATGGTGATTTATGACGCCGACCGTTTCGGGCTATCA
CAGCTTCACCAGCTGCGCGGCCGTGTTGGACGGGGTGAGCATCAATCTTTCTGTATTCTGATGGCTGATCCAAAATCAGA
AACAGGGAAAGAACGGATGAGGATCATGTCGGAGACCAATGACGGTTTCGAGCTGTCTGAAAAGGATCTGGAACTGAGAG
GTCCCGGTGATTTCTTCGGAAAAAAACAAAGCGGAATGCCGGAATTTAAAGTGGCGGACATGGTTCATGATTACAGAGCG
CTTGAAACGGCAAGGCAGGATGCTGCGAATCTTGTGGCTTCTGACGCGTTCTGGAAGGAGCCGGAATACGCTGTGTTAAG
AGATGAATTGCTGAAGAGCGGAGTAATGGACGGGGAAAAATTAAGCTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(599-670)

DEAD/DEAH box helicase (DEAD)

(260-417)

RecG wedge domain (RecG_wedge)

(9-165)

Helicase conserved C-terminal domain (Helicase_C)

(452-572)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

99.707

100

0.997
  recG/mmsA Streptococcus pneumoniae R6

48.82

99.413

0.485
  recG/mmsA Streptococcus pneumoniae R36A

48.82

99.413

0.485
  recG Neisseria meningitidis strain C311

39.542

96.041

0.38