Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LpnH3D14_RS03575 Genome accession   NZ_CP114576
Coordinates   752477..752926 (-) Length   149 a.a.
NCBI ID   WP_027224581.1    Uniprot ID   -
Organism   Legionella pneumophila strain H3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 747477..757926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnH3D14_RS03555 (LpnH3D14_00710) - 747750..748142 (-) 393 WP_011945786.1 hypothetical protein -
  LpnH3D14_RS03560 (LpnH3D14_00711) - 748279..748656 (+) 378 WP_014841112.1 hypothetical protein -
  LpnH3D14_RS03565 (LpnH3D14_00712) - 748857..750164 (+) 1308 WP_014843465.1 tetratricopeptide repeat protein -
  LpnH3D14_RS03570 (LpnH3D14_00713) comEC 750192..752399 (-) 2208 WP_027224580.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LpnH3D14_RS03575 (LpnH3D14_00714) pilE 752477..752926 (-) 450 WP_027224581.1 type IV pilin protein Machinery gene
  LpnH3D14_RS03580 (LpnH3D14_00715) - 752938..756447 (-) 3510 WP_061820497.1 pilus assembly protein -
  LpnH3D14_RS03585 (LpnH3D14_00716) - 756460..756972 (-) 513 WP_027219362.1 pilus assembly protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16365.68 Da        Isoelectric Point: 8.1177

>NTDB_id=766447 LpnH3D14_RS03575 WP_027224581.1 752477..752926(-) (pilE) [Legionella pneumophila strain H3]
MLRHVHFMKNSRMKQSAFTLVEVLISMVIMGILVSIAYPSYLQYIQKSRRADAHATLTQDQIILERCYSQNFSYAAACGA
LPAFPQTTPNGYYTINISNLTATTYTLTATPVGTQAKDTECASMSINQANVKTAVDSSANAQPECWNPG

Nucleotide


Download         Length: 450 bp        

>NTDB_id=766447 LpnH3D14_RS03575 WP_027224581.1 752477..752926(-) (pilE) [Legionella pneumophila strain H3]
ATGCTCCGTCATGTACATTTTATGAAGAATAGCCGTATGAAACAATCCGCGTTTACCCTGGTTGAAGTTCTGATCAGCAT
GGTCATTATGGGAATTCTGGTTTCAATTGCCTATCCATCCTATTTACAATATATCCAAAAATCCCGTCGTGCCGATGCTC
ACGCCACATTGACACAAGATCAAATTATTTTAGAACGCTGTTATTCACAGAATTTTTCTTATGCTGCGGCGTGTGGCGCC
TTACCAGCATTTCCTCAAACAACTCCGAACGGGTACTATACTATCAATATTTCAAACCTGACAGCCACAACGTATACTTT
AACTGCAACCCCTGTTGGAACTCAAGCCAAAGATACCGAGTGTGCCAGCATGTCAATTAACCAGGCCAATGTAAAAACAG
CAGTAGATTCCTCTGCTAATGCGCAACCAGAATGCTGGAATCCCGGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-38)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(39-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

99.329

100

0.993
  pilE Legionella pneumophila strain ERS1305867

99.329

100

0.993