Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LpnH3D14_RS03570 Genome accession   NZ_CP114576
Coordinates   750192..752399 (-) Length   735 a.a.
NCBI ID   WP_027224580.1    Uniprot ID   A0AAP3HEU7
Organism   Legionella pneumophila strain H3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 745192..757399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpnH3D14_RS03550 (LpnH3D14_00709) - 745697..747625 (-) 1929 WP_014843463.1 hypothetical protein -
  LpnH3D14_RS03555 (LpnH3D14_00710) - 747750..748142 (-) 393 WP_011945786.1 hypothetical protein -
  LpnH3D14_RS03560 (LpnH3D14_00711) - 748279..748656 (+) 378 WP_014841112.1 hypothetical protein -
  LpnH3D14_RS03565 (LpnH3D14_00712) - 748857..750164 (+) 1308 WP_014843465.1 tetratricopeptide repeat protein -
  LpnH3D14_RS03570 (LpnH3D14_00713) comEC 750192..752399 (-) 2208 WP_027224580.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LpnH3D14_RS03575 (LpnH3D14_00714) pilE 752477..752926 (-) 450 WP_027224581.1 type IV pilin protein Machinery gene
  LpnH3D14_RS03580 (LpnH3D14_00715) - 752938..756447 (-) 3510 WP_061820497.1 pilus assembly protein -
  LpnH3D14_RS03585 (LpnH3D14_00716) - 756460..756972 (-) 513 WP_027219362.1 pilus assembly protein -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 83100.62 Da        Isoelectric Point: 9.6732

>NTDB_id=766446 LpnH3D14_RS03570 WP_027224580.1 750192..752399(-) (comEC) [Legionella pneumophila strain H3]
MEIFCFLIGVLYAYTYNIYLTIAIPLLFYITPRYPIVLFFIAGCGFALIHQWIVSPKGIPDTQVITQAQLEGTIASIPMQ
RPNKTQFHFAIEKINNNPAQGLIQLNWYNKPPVLRAGQRWQLSVKLKKPRNFHNPGGFNYVSYLAARHIHWTGYIRYGNN
KLISNQPPSFSWLALREKIGDALTKLAPDTETAGIIEALTLNVTHHISSDHWNLFRRTGTVHLFGISGEHIALVSGIFFI
VIRWIWSMNYRCCLFLPANTIASIGGLLAALPYAFLAGFEPPVQRALIGCVLYTIYAIGKQRFTPWQIWRYALFLVLCIE
PHAVFLQGFYFSFLAVACLLLTHQRWPLKNYKKTLALQLSCLIGLMPLTLHWYSYGSINGFLANLFAIPLVSFLIVPLAL
MTMITSPFHWSWILMKPLAWLVALLLQGLTYVEQIAGINITWSITSVTMMLAMTAGLFLRVLLPVKPFKHLAILWIILPL
FPPRTAIYPGEALINILDVGQGLAVTIQTQHHVLLYDTGDSYFQGSDLGQMAIIPFFRSIGIKTIDKIVISHPDKDHKGG
LNSLEKEMQVNQLIVNDPYFYKRGSNCHSYPQWQWDGVSFRFLPIRESFNKKNNNSCILQVSNSAGRVLLTGDIEKAAEE
YLVRNYGSQLASEILVVPHHGSKTSSSYRFLLEVNPLYAIASLGFDNRFKFPHSKTLQSMKTLGITFFRTDECGMAGIKL
PASGKINKPTCMQAE

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=766446 LpnH3D14_RS03570 WP_027224580.1 750192..752399(-) (comEC) [Legionella pneumophila strain H3]
ATGGAAATTTTTTGCTTTTTAATAGGCGTACTTTATGCCTATACCTATAATATTTATCTAACTATTGCGATTCCTTTACT
CTTTTATATCACACCAAGATATCCAATTGTTCTGTTCTTCATTGCCGGCTGTGGCTTTGCCCTGATTCATCAGTGGATTG
TATCTCCCAAGGGCATACCTGATACGCAAGTAATCACACAAGCCCAATTGGAAGGAACAATTGCTTCCATCCCCATGCAA
CGTCCTAACAAAACCCAATTCCATTTTGCAATTGAAAAAATTAATAATAACCCTGCTCAAGGCCTGATCCAATTAAACTG
GTATAACAAACCACCTGTCTTACGAGCCGGTCAGCGATGGCAACTTTCAGTGAAACTAAAAAAACCTCGTAACTTCCACA
ACCCGGGAGGTTTTAATTATGTAAGTTACCTGGCGGCTCGTCATATCCATTGGACTGGCTATATTCGTTATGGGAATAAT
AAGCTAATTAGCAATCAACCCCCTTCTTTCAGTTGGTTAGCACTACGTGAAAAAATAGGGGATGCTTTGACAAAACTGGC
GCCGGATACAGAAACGGCAGGCATCATCGAAGCATTGACATTAAATGTTACTCACCATATCAGTTCAGATCATTGGAATT
TGTTCCGAAGAACAGGAACGGTACATTTATTCGGGATTTCAGGAGAGCACATCGCTCTGGTCTCCGGCATTTTCTTTATA
GTGATAAGATGGATTTGGTCAATGAACTATCGTTGCTGTTTGTTCTTACCAGCCAATACCATAGCGAGTATCGGTGGATT
ACTGGCTGCCTTGCCCTATGCTTTTTTAGCCGGGTTTGAGCCTCCTGTACAACGTGCTTTAATTGGTTGTGTACTTTACA
CAATATACGCCATAGGAAAACAACGTTTTACACCATGGCAAATATGGAGATATGCCTTATTTTTAGTCTTGTGTATTGAG
CCCCATGCCGTATTCCTGCAAGGTTTTTATTTTTCATTTCTTGCCGTGGCCTGTCTTCTTTTGACTCATCAACGCTGGCC
ACTGAAAAATTATAAAAAAACACTGGCATTACAATTAAGTTGCCTCATTGGATTGATGCCCTTGACTCTCCATTGGTACT
CCTATGGTTCTATCAATGGATTTCTTGCCAATTTATTCGCCATACCTTTAGTCAGTTTTCTGATAGTGCCCTTGGCTTTA
ATGACTATGATAACGAGTCCATTTCATTGGTCCTGGATATTGATGAAACCATTGGCGTGGCTTGTTGCCCTGTTACTGCA
AGGACTAACATATGTTGAACAAATAGCAGGGATCAATATCACCTGGTCCATCACCTCAGTAACAATGATGCTGGCTATGA
CAGCAGGTCTGTTTTTAAGGGTATTATTACCTGTCAAGCCATTCAAACACTTGGCTATCCTTTGGATTATCCTTCCCTTA
TTTCCGCCTCGTACTGCAATTTATCCAGGGGAAGCATTAATTAATATTTTGGATGTCGGGCAAGGACTTGCCGTTACGAT
ACAAACGCAACATCATGTTTTACTCTACGATACGGGAGATTCCTATTTTCAGGGGAGTGATTTAGGGCAAATGGCGATAA
TCCCCTTTTTCAGGTCAATTGGAATAAAAACAATTGACAAAATAGTAATAAGCCATCCCGATAAAGATCATAAGGGCGGG
TTAAATTCCCTTGAAAAAGAGATGCAAGTCAATCAATTAATAGTGAATGATCCCTATTTTTATAAACGTGGAAGTAATTG
TCATTCATACCCGCAATGGCAATGGGATGGGGTGAGCTTTCGTTTTTTACCTATCAGGGAATCTTTCAATAAAAAAAATA
ACAATTCTTGTATCTTACAGGTAAGTAATTCGGCTGGCAGGGTTTTGTTAACGGGAGATATTGAAAAAGCAGCTGAGGAG
TACCTGGTAAGAAACTACGGCAGTCAGCTGGCATCCGAAATTTTAGTTGTGCCTCATCATGGGAGCAAAACGTCTTCATC
CTATCGATTTTTGCTGGAAGTAAACCCGCTTTATGCCATTGCATCTTTAGGATTTGATAATCGCTTCAAATTTCCACATT
CTAAAACTTTGCAAAGCATGAAAACATTAGGTATCACTTTTTTTAGAACAGACGAATGCGGAATGGCAGGAATCAAACTA
CCTGCGTCAGGTAAAATTAACAAACCAACCTGTATGCAGGCTGAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-158)

Competence protein (Competence)

(199-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-578)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila strain Lp02

98.638

99.864

0.985
  comEC Legionella pneumophila strain ERS1305867

97.007

100

0.97