Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QFW82_RS04025 Genome accession   NZ_CP126066
Coordinates   921722..922528 (+) Length   268 a.a.
NCBI ID   WP_069868418.1    Uniprot ID   A0A291T4X8
Organism   Streptomyces sp. NA07423     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 916722..927528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFW82_RS04000 (QFW82_04000) pdxA 916938..917942 (-) 1005 WP_231981120.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA -
  QFW82_RS04005 (QFW82_04005) - 917939..918166 (-) 228 WP_283881566.1 hypothetical protein -
  QFW82_RS04010 (QFW82_04010) - 918297..919880 (+) 1584 WP_069868412.1 ABC transporter substrate-binding protein -
  QFW82_RS04015 (QFW82_04015) - 919882..920817 (+) 936 WP_069868414.1 ABC transporter permease -
  QFW82_RS04020 (QFW82_04020) - 920907..921725 (+) 819 WP_232564941.1 ABC transporter permease -
  QFW82_RS04025 (QFW82_04025) amiE 921722..922528 (+) 807 WP_069868418.1 ABC transporter ATP-binding protein Regulator
  QFW82_RS04030 (QFW82_04030) - 922525..923370 (+) 846 WP_283881574.1 ABC transporter ATP-binding protein -
  QFW82_RS04035 (QFW82_04035) - 923466..924233 (+) 768 WP_283881576.1 aldolase/citrate lyase family protein -
  QFW82_RS04040 (QFW82_04040) - 924412..925353 (+) 942 WP_283881578.1 phosphoglycerate dehydrogenase -
  QFW82_RS04045 (QFW82_04045) - 925379..926542 (+) 1164 WP_093704078.1 enolase C-terminal domain-like protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 28665.26 Da        Isoelectric Point: 6.3644

>NTDB_id=766345 QFW82_RS04025 WP_069868418.1 921722..922528(+) (amiE) [Streptomyces sp. NA07423]
MSSVLEVEDLQIELITEHGVVRAVDGISLHVDPGETVTLIGESGSGKSTTAMGLLRLLPPDLAVLSGRAVLAGHDVIADP
AAISGLRGRVVGLIPQDPMTALSPVHTVGRRLTELVRLRVGGTSRHQARLMARELLERVHVPDPERVLGHYPHQLSGGLQ
QRVLIACALAGEPELLVADEPTSALDVTVQAGVLDLLMELQERTGVAILMITHDLGVARLVSDRVHVMRAGRFVESGDVE
RVVTAPTHPYSKQLLAAVPRLVHKEMPA

Nucleotide


Download         Length: 807 bp        

>NTDB_id=766345 QFW82_RS04025 WP_069868418.1 921722..922528(+) (amiE) [Streptomyces sp. NA07423]
ATGAGCAGTGTGCTGGAGGTCGAGGACCTACAGATCGAGCTGATCACCGAACACGGCGTGGTCCGCGCCGTCGACGGGAT
CTCGCTGCACGTCGACCCCGGCGAGACGGTGACGTTGATCGGCGAGTCCGGTTCCGGCAAGTCGACCACGGCGATGGGTC
TGCTCCGGCTCCTGCCACCGGACCTGGCCGTGCTCTCGGGCAGGGCGGTGCTCGCCGGGCACGATGTGATCGCCGACCCG
GCCGCGATCAGCGGCCTGCGCGGACGTGTCGTGGGGCTCATCCCGCAGGACCCGATGACCGCTCTGAGCCCGGTGCACAC
CGTCGGCAGGCGGCTGACCGAGCTGGTTCGCCTGCGAGTCGGGGGAACCAGCCGCCACCAGGCCCGGCTGATGGCGAGGG
AACTGCTGGAGCGGGTGCACGTACCCGACCCCGAACGGGTGCTCGGCCACTACCCCCACCAGCTCTCCGGCGGACTGCAA
CAGCGGGTGCTGATCGCATGCGCGCTCGCGGGCGAGCCCGAGCTGCTGGTGGCCGACGAACCGACCAGCGCTCTCGACGT
CACCGTCCAGGCGGGCGTGCTCGACCTGCTCATGGAGCTGCAAGAACGCACTGGCGTCGCGATCTTGATGATCACCCACG
ACCTCGGCGTGGCCCGGCTCGTGTCCGACCGCGTGCACGTGATGCGCGCGGGCCGGTTCGTGGAGAGCGGCGACGTCGAG
CGGGTGGTGACAGCGCCGACGCACCCCTACTCGAAGCAACTGCTCGCCGCCGTACCGCGGCTGGTACACAAGGAGATGCC
CGCGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(25-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291T4X8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.684

98.134

0.399
  amiE Streptococcus thermophilus LMD-9

40.684

98.134

0.399
  oppD Streptococcus mutans UA159

40.154

96.642

0.388
  amiE Streptococcus salivarius strain HSISS4

39.615

97.015

0.384