Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   QIH95_RS21925 Genome accession   NZ_CP126013
Coordinates   4743290..4745398 (-) Length   702 a.a.
NCBI ID   WP_038955480.1    Uniprot ID   A0ABV2RYA8
Organism   Bradyrhizobium japonicum strain S11L-Bj     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4738290..4750398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIH95_RS21900 (QIH95_21885) - 4739503..4740273 (+) 771 WP_014495163.1 DUF502 domain-containing protein -
  QIH95_RS21905 (QIH95_21890) - 4740379..4741236 (+) 858 WP_038955477.1 NAD(P)-dependent oxidoreductase -
  QIH95_RS21910 (QIH95_21895) - 4741265..4741786 (-) 522 WP_038955478.1 ATPase AAA -
  QIH95_RS21915 (QIH95_21900) - 4741960..4742223 (+) 264 Protein_4364 nuclear transport factor 2 family protein -
  QIH95_RS21920 (QIH95_21905) panE 4742364..4743293 (+) 930 WP_038932962.1 2-dehydropantoate 2-reductase -
  QIH95_RS21925 (QIH95_21910) recG 4743290..4745398 (-) 2109 WP_038955480.1 ATP-dependent DNA helicase RecG Machinery gene
  QIH95_RS21930 (QIH95_21915) - 4745585..4745875 (+) 291 WP_038955481.1 succinate dehydrogenase assembly factor 2 -
  QIH95_RS21935 (QIH95_21920) mfd 4745872..4749390 (+) 3519 WP_248888261.1 transcription-repair coupling factor -

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 77114.33 Da        Isoelectric Point: 8.4338

>NTDB_id=766313 QIH95_RS21925 WP_038955480.1 4743290..4745398(-) (recG) [Bradyrhizobium japonicum strain S11L-Bj]
MRPSLLNPLFAPVTSLPGVGPKQDKLLQYLLSRNETPRLVDLLLHLPSQVIDRRARPKIRDAVQGTMVTLEVTIDRHRPP
PPRNARAPYLVFASDDTGDVVLTFFRAQPGYVEKLLPVGEKRYVSGTLQMYDGIPQIVHPDRVLDEEAIAKLSGIDPVYP
LTTGLALGSLRRAVAQALQKLPALPEWISPEVMRRCSFPTVTEALSRVHQPVELTDILPEKPYWSRLAFDELLAGQLALA
LIRAQLRRPAGVRNAGDGHLRNKIIDALPYALTPSQRNAAAAIAEDLKQPVRMLRLLQGDVGSGKTVVALLAAAAVAEVG
KQAALMAPTEILARQHIKTIAPLAERAGLRVAILTGREKGKERRELLAQLEAGEINLLVGTHALIQDDVIFNDLALAVVD
EQHRFGVRERLALTSKGAAVDVLVLSATPIPRTLVLTYFGDMDISELREKPAGRQPIETRTISMSRLHEVTDSIGRALQA
GKLVYWICPLVEESEAEGTEHLTNATKRFESLQKRFGDRVGLVHGQMKGTEKDRVMGEFAAHEIGLLVATTVVEVGVDVP
AATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYSEPLGEMSKARLKVIRETTDGFRIAEEDLKLRGEGDVLGVRQ
SGLPGYRIARSEVHGQLITQARDEALRILKDDPKLKGERGEALRCLLYLYERDEAIPLIGAG

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=766313 QIH95_RS21925 WP_038955480.1 4743290..4745398(-) (recG) [Bradyrhizobium japonicum strain S11L-Bj]
ATGCGCCCCAGCCTGCTCAATCCGCTGTTTGCTCCCGTGACCAGCCTGCCCGGCGTCGGCCCGAAGCAGGACAAGCTGCT
GCAGTACCTGCTCAGCCGCAATGAGACGCCGCGCCTGGTTGACCTGCTGCTGCATTTGCCGAGCCAGGTCATCGACCGCC
GCGCGCGGCCAAAGATCCGCGACGCGGTCCAGGGAACCATGGTGACGCTGGAGGTCACCATCGATCGCCATCGCCCGCCT
CCGCCGCGCAATGCGCGCGCCCCGTATCTCGTCTTTGCCAGCGACGATACCGGCGACGTCGTGCTGACCTTCTTCCGCGC
CCAACCCGGCTACGTCGAAAAACTGCTGCCTGTTGGCGAGAAGCGCTACGTCTCGGGCACGCTCCAGATGTATGACGGCA
TCCCGCAGATCGTGCATCCCGACCGCGTGCTCGACGAGGAGGCGATCGCAAAACTCTCCGGCATCGACCCGGTCTATCCG
CTGACCACGGGTCTGGCGCTCGGCTCGCTGCGACGCGCGGTCGCCCAAGCGCTGCAGAAGCTGCCCGCTTTGCCGGAATG
GATCAGCCCGGAGGTGATGCGCCGCTGCAGTTTTCCGACGGTCACCGAGGCGCTCAGCCGCGTGCATCAACCGGTCGAGC
TCACCGACATCCTGCCCGAAAAGCCCTACTGGTCGCGCCTCGCCTTCGACGAGCTGTTGGCCGGCCAGCTCGCGCTGGCC
CTGATCCGCGCGCAATTGCGCCGTCCCGCCGGCGTCCGCAATGCCGGCGACGGCCACTTGCGCAACAAGATCATCGACGC
CCTGCCCTATGCCCTGACCCCGTCCCAGCGCAACGCCGCGGCCGCCATCGCCGAGGATCTGAAACAGCCCGTGCGCATGC
TGCGCCTGCTTCAGGGCGATGTCGGCTCGGGCAAGACCGTCGTGGCGCTGCTGGCGGCCGCCGCCGTCGCCGAAGTCGGC
AAGCAAGCCGCGCTGATGGCGCCGACGGAAATCTTGGCGCGGCAGCACATCAAGACCATCGCCCCGCTCGCGGAGCGCGC
AGGGCTGCGCGTGGCCATCCTCACCGGCCGCGAGAAGGGCAAGGAGCGGCGCGAGCTGTTGGCGCAACTCGAAGCCGGCG
AGATCAATCTCCTCGTCGGCACCCACGCGCTGATCCAGGACGACGTGATCTTCAACGATCTCGCCCTGGCCGTCGTCGAC
GAGCAGCATCGTTTCGGCGTGCGCGAACGCCTCGCGCTGACCTCGAAGGGCGCCGCCGTCGACGTGCTGGTGCTGAGCGC
GACGCCGATCCCGCGCACGCTGGTGCTGACCTATTTCGGCGACATGGACATCAGCGAGCTCCGCGAAAAGCCCGCCGGCC
GCCAGCCAATCGAGACCCGCACCATCTCGATGAGCCGCCTCCACGAGGTCACCGATAGCATCGGCCGCGCGTTGCAGGCG
GGCAAGCTGGTCTACTGGATCTGCCCGCTGGTCGAGGAATCCGAGGCCGAAGGCACCGAGCACCTGACCAATGCGACCAA
GCGCTTCGAGAGCCTGCAAAAGCGTTTCGGCGACCGCGTCGGCCTCGTCCACGGCCAGATGAAGGGCACCGAGAAGGACC
GCGTGATGGGCGAGTTCGCCGCCCACGAGATCGGCCTTCTGGTTGCGACCACCGTTGTCGAGGTCGGCGTCGACGTGCCG
GCCGCGACCATCATGGTGATCGAGAACGCCGAACGGTTTGGCTTGGCCCAGCTGCACCAGCTGCGCGGCCGCATCGGGCG
CGGCTCGGAAGCCTCGACCTGCCTCCTTCTCTACTCGGAGCCGCTCGGCGAAATGTCCAAGGCACGGCTGAAGGTCATCC
GCGAGACCACCGACGGCTTCCGCATCGCCGAGGAGGATTTGAAGCTGCGCGGCGAAGGCGACGTGCTGGGCGTCCGCCAG
AGCGGCTTGCCCGGCTACCGCATCGCGCGGTCGGAGGTGCACGGCCAGCTCATCACCCAGGCCAGAGACGAGGCGCTGCG
GATCCTGAAGGACGATCCGAAGCTGAAGGGCGAGCGCGGCGAGGCGCTGCGGTGCCTGCTGTATCTCTATGAGCGGGACG
AAGCGATCCCGCTGATCGGGGCAGGTTAG

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(18-178)

DEAD/DEAH box helicase (DEAD)

(296-430)

Helicase conserved C-terminal domain (Helicase_C)

(501-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

43.011

92.735

0.399
  recG Bacillus subtilis subsp. subtilis str. 168

38.93

95.869

0.373
  recG/mmsA Streptococcus pneumoniae R6

39.542

93.305

0.369
  recG/mmsA Streptococcus pneumoniae R36A

39.542

93.305

0.369