Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QIH85_RS17535 Genome accession   NZ_CP126010
Coordinates   3727754..3727960 (-) Length   68 a.a.
NCBI ID   WP_232208671.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain N03G-Bj     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3722754..3732960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIH85_RS17520 (QIH85_17520) - 3723744..3724769 (-) 1026 WP_038936817.1 aldo/keto reductase -
  QIH85_RS17525 (QIH85_17525) - 3724959..3727487 (+) 2529 WP_051664531.1 excinuclease ABC subunit UvrA -
  QIH85_RS17530 (QIH85_17530) - 3727416..3727712 (-) 297 WP_080703856.1 hypothetical protein -
  QIH85_RS17535 (QIH85_17535) letA 3727754..3727960 (-) 207 WP_232208671.1 response regulator transcription factor Regulator
  QIH85_RS17540 (QIH85_17540) - 3728383..3728898 (+) 516 WP_038936820.1 phasin family protein -
  QIH85_RS17545 (QIH85_17545) - 3729003..3729203 (-) 201 WP_148311915.1 hypothetical protein -
  QIH85_RS17550 (QIH85_17550) - 3729746..3729916 (+) 171 WP_200875140.1 hypothetical protein -
  QIH85_RS49370 - 3730321..3730524 (-) 204 WP_224517745.1 helix-turn-helix domain-containing protein -
  QIH85_RS17555 (QIH85_17555) - 3730611..3731507 (+) 897 WP_158332876.1 ABC transporter substrate-binding protein -
  QIH85_RS17560 (QIH85_17560) - 3731668..3731926 (-) 259 Protein_3502 cation:dicarboxylase symporter family transporter -
  QIH85_RS17565 (QIH85_17565) - 3732016..3732297 (+) 282 WP_148311916.1 hypothetical protein -
  QIH85_RS17570 (QIH85_17570) - 3732687..3732911 (+) 225 WP_039147044.1 hypothetical protein -

Sequence

Protein


Download         Length: 68 a.a.        Molecular weight: 7485.54 Da        Isoelectric Point: 5.0050

>NTDB_id=766231 QIH85_RS17535 WP_232208671.1 3727754..3727960(-) (letA) [Bradyrhizobium japonicum strain N03G-Bj]
MYEVIHVADGEEALAWYGRRVGDVLITDVKLPGGIDGWQIAERCREEDPKRPVIHATCFPPVAPRAGG

Nucleotide


Download         Length: 207 bp        

>NTDB_id=766231 QIH85_RS17535 WP_232208671.1 3727754..3727960(-) (letA) [Bradyrhizobium japonicum strain N03G-Bj]
GTGTACGAGGTCATCCATGTGGCTGACGGCGAAGAAGCGTTGGCGTGGTACGGGCGGCGGGTCGGCGACGTTCTCATCAC
GGACGTCAAGCTGCCCGGAGGCATCGACGGATGGCAGATCGCCGAACGTTGCAGAGAGGAGGATCCCAAACGCCCGGTGA
TCCATGCGACCTGTTTTCCTCCCGTCGCGCCCCGCGCTGGCGGATAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-57)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

40

100

0.412
  letA Legionella pneumophila strain ERS1305867

40

100

0.412
  spo0A Bacillus subtilis subsp. subtilis str. 168

41.667

88.235

0.368