Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   QIH94_RS21735 Genome accession   NZ_CP126006
Coordinates   4444333..4446441 (-) Length   702 a.a.
NCBI ID   WP_304489871.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain S06K-Bj     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4439333..4451441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIH94_RS21705 (QIH94_21705) - 4439489..4440259 (+) 771 WP_014495163.1 DUF502 domain-containing protein -
  QIH94_RS21710 (QIH94_21710) - 4440365..4441222 (+) 858 WP_028158735.1 NAD(P)-dependent oxidoreductase -
  QIH94_RS21715 (QIH94_21715) - 4441250..4441771 (-) 522 WP_028158736.1 ATPase AAA -
  QIH94_RS21720 (QIH94_21720) - 4441946..4442335 (+) 390 WP_028158737.1 hypothetical protein -
  QIH94_RS21725 (QIH94_21725) - 4442432..4443262 (+) 831 WP_304489873.1 helix-turn-helix domain-containing protein -
  QIH94_RS21730 (QIH94_21730) panE 4443407..4444336 (+) 930 WP_304489872.1 2-dehydropantoate 2-reductase -
  QIH94_RS21735 (QIH94_21735) recG 4444333..4446441 (-) 2109 WP_304489871.1 ATP-dependent DNA helicase RecG Machinery gene
  QIH94_RS21740 (QIH94_21740) - 4446626..4446916 (+) 291 WP_248877644.1 succinate dehydrogenase assembly factor 2 -
  QIH94_RS21745 (QIH94_21745) mfd 4446913..4450431 (+) 3519 WP_304489870.1 transcription-repair coupling factor -

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 77140.36 Da        Isoelectric Point: 8.6697

>NTDB_id=766167 QIH94_RS21735 WP_304489871.1 4444333..4446441(-) (recG) [Bradyrhizobium japonicum strain S06K-Bj]
MRPSLLNPLFAPVTSLPGVGPKQDKLLQYLLSRNETPRLVDLLLHLPSQVIDRRARPKIRDAVQGTMVTLEVTVDRHRPP
PPRNARAPYLVYASDDTGDVVLTFFRAKPGYVEKLLPVGKKRYVSGTLQMYDGIPQIVHPDRVLDEEAISKLSGIDPVYP
LTTGLALGSLRRAVAQALQKLPALPEWISPEVMRRCSFPTVTEALSRVHQPVELTDILPEKPYWSRLAFDELLAGQLALA
LIRAQLRRPAGVRNAGDGHLRNKIIDALPYALTPSQRNAAAAIAEDLKQPVRMLRLLQGDVGSGKTVVALLAAAAVAEVG
KQAALMAPTEILARQHIKTIAPLAERAGLRVAILTGREKGKERRELLAQLEAGEINLLVGTHALIQDDVIFSDLALAVVD
EQHRFGVRERLALTSKGEAVDVLVLSATPIPRTLVLTYFGDMDISELREKPAGRQPIETRTISMSRLDEVTDSIGRALEA
GKLVYWICPLVEESEAEGTEHLTNATKRFESLQKRFGDRVGLVHGQMKGTEKDRVMGQFAAHEIGLLVATTVVEVGVDVP
AATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYSEPLGEMSKARLKVIRETTDGFRIAEEDLKLRGEGDVLGVRQ
SGLPGYRIARSEVHGQLITQARDEALRILKDDPKLKGERGEALRCLLYLYERDEAIPLIGAG

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=766167 QIH94_RS21735 WP_304489871.1 4444333..4446441(-) (recG) [Bradyrhizobium japonicum strain S06K-Bj]
ATGCGCCCCAGCCTGCTTAATCCGCTGTTTGCTCCCGTGACCAGCCTGCCCGGCGTCGGTCCGAAGCAGGACAAGCTGCT
GCAGTACCTGCTCAGCCGCAATGAGACGCCGCGCCTGGTTGACCTGCTGCTGCATTTGCCGAGCCAGGTCATCGACCGCC
GCGCGCGGCCAAAGATCCGCGACGCCGTCCAGGGAACCATGGTGACGCTGGAGGTCACCGTCGATCGCCATCGCCCGCCT
CCGCCGCGCAATGCGCGCGCCCCGTATCTGGTCTATGCCAGCGACGACACCGGCGACGTCGTGCTGACCTTCTTCCGCGC
CAAGCCCGGCTATGTCGAAAAGCTGCTGCCTGTTGGCAAGAAGCGCTACGTCTCCGGCACGCTCCAGATGTATGACGGCA
TCCCGCAGATCGTGCATCCCGACCGCGTGCTCGACGAGGAGGCGATTTCAAAGCTCTCGGGGATTGATCCCGTCTATCCG
CTGACCACGGGTCTGGCGCTGGGCTCGCTGCGACGCGCGGTCGCCCAAGCGCTGCAGAAGCTGCCCGCTTTGCCGGAATG
GATCAGCCCGGAGGTGATGCGCCGCTGCAGTTTTCCGACGGTCACCGAAGCACTCAGCCGCGTGCATCAACCGGTCGAGC
TCACGGACATCCTGCCCGAAAAGCCCTACTGGTCGCGCCTCGCCTTCGACGAGCTGCTGGCCGGCCAGCTCGCGCTGGCC
CTGATCCGCGCGCAATTGCGCCGCCCCGCCGGCGTCCGCAATGCCGGCGACGGTCACTTGCGCAACAAGATCATCGACGC
CCTGCCCTATGCCCTGACCCCGTCCCAGCGCAACGCCGCGGCCGCCATCGCCGAGGATCTGAAACAGCCCGTGCGCATGC
TGCGCCTGCTTCAGGGCGATGTCGGCTCGGGCAAGACCGTGGTGGCGCTGCTGGCGGCCGCCGCCGTCGCCGAAGTCGGC
AAGCAGGCCGCGCTGATGGCGCCGACGGAAATTTTGGCGCGCCAGCACATCAAGACCATCGCCCCGCTCGCGGAGCGCGC
AGGGCTGCGCGTGGCCATCCTCACCGGCCGCGAGAAAGGCAAGGAGCGGCGCGAGCTGTTGGCGCAGCTCGAAGCCGGCG
AGATCAATCTCCTCGTCGGCACCCATGCGCTGATCCAGGACGACGTGATCTTCAGCGATCTCGCCCTGGCCGTCGTCGAC
GAGCAGCATCGTTTCGGCGTGCGCGAACGCCTCGCGCTGACCTCGAAGGGCGAAGCCGTCGACGTGCTGGTGCTGAGCGC
GACGCCGATCCCGCGCACGCTGGTGCTGACCTATTTCGGCGACATGGACATCTCCGAGTTGCGCGAGAAGCCCGCCGGCC
GCCAGCCGATCGAGACCCGCACCATCTCGATGAGCCGCCTCGACGAGGTCACCGATAGCATCGGCCGGGCCCTGGAGGCG
GGCAAGCTGGTCTACTGGATCTGCCCACTGGTCGAGGAATCCGAGGCCGAAGGCACCGAGCATCTCACCAACGCCACCAA
ACGCTTCGAGAGCCTGCAAAAGCGCTTCGGCGACCGCGTCGGCCTCGTCCACGGCCAGATGAAGGGCACCGAGAAGGACC
GGGTGATGGGCCAGTTCGCAGCCCACGAGATCGGCCTTCTGGTTGCGACCACCGTGGTCGAGGTCGGCGTCGACGTGCCG
GCCGCGACCATCATGGTGATCGAGAACGCCGAACGGTTTGGCTTGGCCCAGCTGCACCAGCTGCGCGGCCGCATCGGGCG
CGGCTCGGAAGCCTCGACCTGCCTCTTGCTGTACAGCGAGCCGCTCGGCGAGATGTCGAAGGCACGGCTGAAGGTCATCC
GCGAGACCACCGACGGCTTCCGCATCGCCGAGGAGGATTTGAAGCTGCGCGGCGAAGGCGACGTGCTGGGCGTCCGCCAG
AGCGGCCTGCCCGGCTACCGCATCGCGCGGTCGGAGGTGCACGGCCAGCTCATCACCCAGGCCAGAGACGAGGCGCTGCG
GATCCTGAAGGACGATCCGAAGCTGAAGGGCGAGCGTGGCGAGGCGCTGCGGTGTTTGCTGTATCTGTACGAGCGCGACG
AGGCGATCCCGCTGATCGGGGCGGGTTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(296-430)

Helicase conserved C-terminal domain (Helicase_C)

(501-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-677)

RecG wedge domain (RecG_wedge)

(18-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

43.164

92.735

0.4
  recG Bacillus subtilis subsp. subtilis str. 168

39.318

96.011

0.377
  recG/mmsA Streptococcus pneumoniae R6

38.991

93.162

0.363
  recG/mmsA Streptococcus pneumoniae R36A

38.991

93.162

0.363