Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   H7K53_RS17500 Genome accession   NZ_AP022077
Coordinates   3610175..3610915 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain WP4-W18-ESBL-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3605175..3615915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7K53_RS17480 (WP4W18E11_34210) aroB 3605717..3606799 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  H7K53_RS17485 (WP4W18E11_34220) aroK 3606828..3607397 (-) 570 WP_000643712.1 shikimate kinase AroK -
  H7K53_RS17490 (WP4W18E11_34230) pilQ 3607409..3609574 (-) 2166 WP_004742153.1 type IV pilus secretin PilQ family protein Machinery gene
  H7K53_RS17495 (WP4W18E11_34240) pilP 3609637..3610164 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  H7K53_RS17500 (WP4W18E11_34250) pilO 3610175..3610915 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  H7K53_RS17505 (WP4W18E11_34260) pilN 3610912..3611553 (-) 642 WP_004742152.1 PilN domain-containing protein Machinery gene
  H7K53_RS17510 (WP4W18E11_34270) pilM 3611553..3612611 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  H7K53_RS17515 (WP4W18E11_34280) ponA 3612774..3615329 (+) 2556 WP_182638905.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=76553 H7K53_RS17500 WP_000076101.1 3610175..3610915(-) (pilO) [Acinetobacter baumannii strain WP4-W18-ESBL-11]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=76553 H7K53_RS17500 WP_000076101.1 3610175..3610915(-) (pilO) [Acinetobacter baumannii strain WP4-W18-ESBL-11]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAAAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGACGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment