Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H7K53_RS17505 Genome accession   NZ_AP022077
Coordinates   3610912..3611553 (-) Length   213 a.a.
NCBI ID   WP_004742152.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain WP4-W18-ESBL-11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3605912..3616553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7K53_RS17485 (WP4W18E11_34220) aroK 3606828..3607397 (-) 570 WP_000643712.1 shikimate kinase AroK -
  H7K53_RS17490 (WP4W18E11_34230) pilQ 3607409..3609574 (-) 2166 WP_004742153.1 type IV pilus secretin PilQ family protein Machinery gene
  H7K53_RS17495 (WP4W18E11_34240) pilP 3609637..3610164 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  H7K53_RS17500 (WP4W18E11_34250) pilO 3610175..3610915 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  H7K53_RS17505 (WP4W18E11_34260) pilN 3610912..3611553 (-) 642 WP_004742152.1 PilN domain-containing protein Machinery gene
  H7K53_RS17510 (WP4W18E11_34270) pilM 3611553..3612611 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  H7K53_RS17515 (WP4W18E11_34280) ponA 3612774..3615329 (+) 2556 WP_182638905.1 penicillin-binding protein PBP1a -
  H7K53_RS17520 (WP4W18E11_34290) - 3615347..3616171 (-) 825 WP_004742150.1 putative RNA methyltransferase -
  H7K53_RS17525 (WP4W18E11_34300) - 3616174..3616506 (-) 333 WP_000169599.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24059.46 Da        Isoelectric Point: 5.3968

>NTDB_id=76554 H7K53_RS17505 WP_004742152.1 3610912..3611553(-) (pilN) [Acinetobacter baumannii strain WP4-W18-ESBL-11]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDFAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=76554 H7K53_RS17505 WP_004742152.1 3610912..3611553(-) (pilN) [Acinetobacter baumannii strain WP4-W18-ESBL-11]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTTTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

98.592

100

0.986
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704

Multiple sequence alignment