Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   O1449_RS12960 Genome accession   NZ_CP114264
Coordinates   2720221..2720649 (-) Length   142 a.a.
NCBI ID   WP_269229609.1    Uniprot ID   A0A9E9NN21
Organism   Acinetobacter sp. TR3     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2715221..2725649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1449_RS12930 (O1449_12945) - 2715304..2715573 (-) 270 WP_087545614.1 HPr family phosphocarrier protein -
  O1449_RS12935 (O1449_12950) rapZ 2715570..2716421 (-) 852 WP_269229614.1 RNase adapter RapZ -
  O1449_RS12940 (O1449_12955) panC 2716445..2717290 (-) 846 WP_269229613.1 pantoate--beta-alanine ligase -
  O1449_RS12945 (O1449_12960) panB 2717294..2718103 (-) 810 WP_269229612.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  O1449_RS12950 (O1449_12965) folK 2718142..2718630 (-) 489 WP_269238515.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  O1449_RS12955 (O1449_12970) pcnB 2718627..2720081 (-) 1455 WP_269238516.1 polynucleotide adenylyltransferase PcnB -
  O1449_RS12960 (O1449_12975) comEA 2720221..2720649 (-) 429 WP_269229609.1 ComEA family DNA-binding protein Machinery gene
  O1449_RS12965 (O1449_12980) mazG 2720646..2721425 (-) 780 WP_269238517.1 nucleoside triphosphate pyrophosphohydrolase -
  O1449_RS12970 (O1449_12985) - 2721520..2722293 (+) 774 WP_269238518.1 SDR family oxidoreductase -
  O1449_RS12975 (O1449_12990) - 2722339..2724645 (-) 2307 WP_269229606.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16041.27 Da        Isoelectric Point: 10.3625

>NTDB_id=765305 O1449_RS12960 WP_269229609.1 2720221..2720649(-) (comEA) [Acinetobacter sp. TR3]
MNLPQLRSKHNLFLFIFIYLGCFSSVDAQPFDQSYEKWKAQQQARDQQLAKQPNNNYYLSRPTAQQGSKQVSSSVNIQGD
KISLNQANLQQLQTLNGVGEKKAQAIVEYRQKNGGFKTIDELVNVKGIGPKLLEKNKARLGL

Nucleotide


Download         Length: 429 bp        

>NTDB_id=765305 O1449_RS12960 WP_269229609.1 2720221..2720649(-) (comEA) [Acinetobacter sp. TR3]
ATGAATTTGCCGCAGCTACGCAGCAAACATAATCTTTTTTTATTCATTTTTATATATTTAGGGTGTTTTTCATCTGTAGA
TGCGCAGCCATTCGATCAATCCTATGAAAAATGGAAAGCGCAACAACAGGCACGTGATCAGCAATTGGCGAAGCAACCAA
ACAATAATTATTATTTATCAAGACCCACGGCACAACAAGGTTCAAAGCAAGTTTCATCTTCTGTAAACATTCAAGGAGAT
AAAATTAGTTTGAACCAAGCAAATTTACAGCAGCTACAAACGTTGAATGGCGTGGGTGAGAAAAAAGCTCAGGCAATTGT
TGAATATCGCCAAAAGAATGGTGGTTTTAAAACGATAGATGAGTTGGTCAATGTAAAAGGAATTGGACCCAAATTGCTTG
AGAAAAATAAAGCACGCTTAGGATTATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(80-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

52.206

95.775

0.5
  comEA Acinetobacter baumannii D1279779

48.148

95.07

0.458
  comEA Acinetobacter baylyi ADP1

45.588

95.775

0.437