Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   O1449_RS06335 Genome accession   NZ_CP114264
Coordinates   1369841..1370548 (-) Length   235 a.a.
NCBI ID   WP_269230142.1    Uniprot ID   A0A9E9NPL2
Organism   Acinetobacter sp. TR3     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1364841..1375548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1449_RS06320 (O1449_06330) - 1365474..1367057 (+) 1584 WP_269239474.1 urea amidolyase family protein -
  O1449_RS06325 (O1449_06335) - 1367050..1368777 (+) 1728 WP_269239475.1 biotin carboxylase N-terminal domain-containing protein -
  O1449_RS06330 (O1449_06340) - 1368851..1369627 (-) 777 WP_004662605.1 M48 family metallopeptidase -
  O1449_RS06335 (O1449_06345) crp 1369841..1370548 (-) 708 WP_269230142.1 cAMP-activated global transcriptional regulator CRP Regulator
  O1449_RS06340 (O1449_06350) - 1370697..1371119 (+) 423 WP_269230143.1 OsmC family protein -
  O1449_RS06345 (O1449_06355) - 1371190..1371999 (-) 810 WP_269239476.1 M23 family metallopeptidase -
  O1449_RS06350 (O1449_06360) clpB 1372253..1374832 (+) 2580 WP_269239477.1 ATP-dependent chaperone ClpB -
  O1449_RS06355 (O1449_06365) - 1375000..1375419 (+) 420 WP_269239478.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26550.10 Da        Isoelectric Point: 4.7361

>NTDB_id=765294 O1449_RS06335 WP_269230142.1 1369841..1370548(-) (crp) [Acinetobacter sp. TR3]
MTSNFSHLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFENNPQRTAEVRTRDICEIAEISYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLDDNAFSEDEFDDED

Nucleotide


Download         Length: 708 bp        

>NTDB_id=765294 O1449_RS06335 WP_269230142.1 1369841..1370548(-) (crp) [Acinetobacter sp. TR3]
ATGACTTCAAATTTTTCACATCTTAGCACTGATGCTTTGTCTCCAGGTCAATTACCTGAATCAGTTAAAGCATTGCTAAA
ACGTGCTCACATTAATAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACAGAATCAAAATCACTGTACTTAATAT
TAAAAGGTTCAGTATCAATCATATTACGTGAAGACGATGAGCGTGAGATTGTTGTTGCATACCTCAATCCAGGTGATTTC
TTTGGTGAAATGGGGTTGTTTGAAAATAACCCTCAACGTACTGCTGAAGTCCGTACTCGAGATATTTGCGAAATTGCAGA
AATCTCATATGAAAATTTCCACGAACTCAGCAAGCAATATCCTGACCTGAGCTATGCTGTATTTGCTCAGCTTGTTCGCC
GCCTGAAGAATACAACGCGTAAAGTCACTGACTTAGCATTTATCGACGTATCTGGTCGTATTGCTCGTTGTCTAATTGAC
TTATCTGCACAACCTGAGGCAATGATTCTACCGAATGGTCGTCAGATTCGTATTACACGTCAAGAAATTGGTCGTATTGT
GGGTTGTTCACGTGAAATGGTTGGTCGTGTTTTAAAAACACTTGAAGATCAAGGCATGATTCAAACTGATGGTAAAGCAA
TTTTAATTTTTGATACTTCTTTAGATGATAACGCATTTTCTGAAGATGAATTTGATGATGAGGATTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

92.34

100

0.923
  crp Vibrio cholerae strain A1552

47.596

88.511

0.421
  crp Haemophilus influenzae Rd KW20

49.223

82.128

0.404