Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   O1449_RS01075 Genome accession   NZ_CP114264
Coordinates   220946..222370 (-) Length   474 a.a.
NCBI ID   WP_269238919.1    Uniprot ID   -
Organism   Acinetobacter sp. TR3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 215946..227370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1449_RS01055 (O1449_01055) lptG 216477..217547 (+) 1071 WP_269238917.1 LPS export ABC transporter permease LptG -
  O1449_RS01060 (O1449_01060) - 217562..218056 (+) 495 WP_269238918.1 putative molybdenum carrier protein -
  O1449_RS01065 (O1449_01065) gpmI 218175..219719 (+) 1545 WP_269229053.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  O1449_RS01070 (O1449_01070) - 219729..220904 (+) 1176 WP_269229052.1 S41 family peptidase -
  O1449_RS01075 (O1449_01075) pilR 220946..222370 (-) 1425 WP_269238919.1 sigma-54 dependent transcriptional regulator Regulator
  O1449_RS01080 (O1449_01080) pilS 222393..223958 (-) 1566 WP_269238921.1 ATP-binding protein Regulator
  O1449_RS01085 (O1449_01085) - 223978..224613 (-) 636 WP_005163158.1 response regulator -
  O1449_RS01090 (O1449_01090) pbpG 224824..225891 (+) 1068 WP_269238922.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  O1449_RS01095 (O1449_01095) - 226052..226819 (+) 768 WP_269229048.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 53131.14 Da        Isoelectric Point: 6.1058

>NTDB_id=765282 O1449_RS01075 WP_269238919.1 220946..222370(-) (pilR) [Acinetobacter sp. TR3]
MAIKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQTHLDQLIQKALNRPQPEQEAAESALENKLLIGRSTPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LASHFIQKISQEWEVSVKTLSSRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSPIATPIVSFSTQ
DENDHAISTSPMGSKKLPPEGLELYLENIEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=765282 O1449_RS01075 WP_269238919.1 220946..222370(-) (pilR) [Acinetobacter sp. TR3]
ATGGCAATTAAACAACCTCTCGTCTTACTCGTAGACGATGAAGAAGACTTATGTCTTTTAATGCAAATGACGCTCGCACG
AATGGGCATTAAAACTCATCTTGCCTATCGCGTAGAGCAAGCAAAAAAATTCTTTACCGAGTTTCAGTACGATGCTTGTT
TAACAGATTTGAATCTCCCAGATGGCAACGGTCTGGACTTGGTTAAACATGTCACACAAAACTATCCCAACACACCGATT
GCAGTATTAACAGCGTATGGCAATATGGATATTGCAATTGCTGCATTAAAAGCAGGTGCTTTTGATTTTGTCAGTAAACC
TGTCAATCAAACTCACCTAGATCAATTGATTCAAAAAGCATTGAATCGACCACAGCCTGAACAAGAAGCTGCTGAGAGTG
CACTAGAAAATAAACTTCTGATTGGTCGTTCTACGCCTATTCAACAATTACGAATTGCTTTAAAGAAAATTGCTCGATCT
CAAGCCCCTGTCTTTATTACCGGTGAATCAGGGACAGGAAAAGAAGTTGTTGCCAATTTAGTTCATCGTCTGAGTAATCG
TAGCGAAGGACCTTTTATTGCGATCAACTGTGGTGCTATTCCAACAGAGTTAATGGAAAGTGAATTATTTGGTCATAAAA
AAGGCAGCTTCACAGGCGCAACCCAAGACAAACAAGGTCTCATTCTTTCCGCACATGGGGGTAGTTTATTCTTAGATGAG
ATCGCTGAATTACCCTTAAGTATGCAGGTAAAACTGCTTCGTGCTGTACAAGAAAAGAAAATTCGCCCTGTTGGCTCAGA
TCAAGAAATTGATGTTGATTTCCGTGTCATCAGCGCAAGTCATCAAGATCTCGAATTACTAGTACAACAAGGTCGCTTCA
GACAAGATTTATTTTTCCGTATACATGTAATGGATATTGTGCTTCCACCATTACGCGAACGTGGACAAGATATTTTACTA
CTTGCAAGCCACTTTATTCAAAAGATCAGCCAAGAATGGGAAGTATCGGTTAAAACCCTCTCTTCTCGCGCAGAACAGTT
CTTATTACAGCAATATTTCCCAGGTAATGTTCGTGAACTTCGCAACATTATTGAACGTGCAATTACGCTCAGTGATGATG
AAACTATTGATCTAGCCCATCTTCAAACAGCTCCTCTACGTAGCCCTATTGCAACGCCAATAGTCTCATTTTCAACACAA
GATGAAAATGATCATGCGATAAGCACTAGCCCTATGGGTTCTAAAAAGCTACCACCTGAAGGACTGGAGCTCTATTTAGA
AAATATTGAAAAAGAAATTCTTCTCAATGCACTGAATTTAACCCATTGGAATCGAACTTTAGCGGCTAAAAAATTAGGAA
TGACCTTCCGTTCTTTACGCTATCGTTTGAAGAAGTTTGGTTTAGATACCGAAGATGATGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

83.544

100

0.835
  pilR Pseudomonas aeruginosa PAK

50.216

97.468

0.489