Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   O1450_RS14920 Genome accession   NZ_CP114256
Coordinates   3077516..3078943 (+) Length   475 a.a.
NCBI ID   WP_269229051.1    Uniprot ID   -
Organism   Acinetobacter sp. TR11     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3072516..3083943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1450_RS14900 (O1450_14900) - 3073067..3073834 (-) 768 WP_269229048.1 hypothetical protein -
  O1450_RS14905 (O1450_14905) pbpG 3073995..3075062 (-) 1068 WP_269229049.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  O1450_RS14910 (O1450_14910) - 3075273..3075908 (+) 636 WP_005163158.1 response regulator -
  O1450_RS14915 (O1450_14915) pilS 3075928..3077493 (+) 1566 WP_269229050.1 ATP-binding protein Regulator
  O1450_RS14920 (O1450_14920) pilR 3077516..3078943 (+) 1428 WP_269229051.1 sigma-54 dependent transcriptional regulator Regulator
  O1450_RS14925 (O1450_14925) - 3078986..3080161 (-) 1176 WP_269229052.1 S41 family peptidase -
  O1450_RS14930 (O1450_14930) gpmI 3080171..3081715 (-) 1545 WP_269229053.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  O1450_RS14935 (O1450_14935) - 3081834..3082220 (-) 387 WP_269229054.1 putative molybdenum carrier protein -
  O1450_RS16530 - 3082181..3082327 (-) 147 WP_331276166.1 putative molybdenum carrier protein -
  O1450_RS14940 (O1450_14940) lptG 3082342..3083412 (-) 1071 WP_269229055.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 53231.22 Da        Isoelectric Point: 6.1058

>NTDB_id=765270 O1450_RS14920 WP_269229051.1 3077516..3078943(+) (pilR) [Acinetobacter sp. TR11]
MAIKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQTHLDQLIQKALNRPQPEQEAAESALENKLLIGRSTPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LASHFIQKISQEWEVSVKTLSSRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSPIATPIVSFSTQ
DENNDHAVSTSPMGSKKLPPEGLELYLENIEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=765270 O1450_RS14920 WP_269229051.1 3077516..3078943(+) (pilR) [Acinetobacter sp. TR11]
ATGGCAATTAAACAACCACTCGTCTTACTCGTAGACGATGAAGAAGACTTATGTCTTTTAATGCAAATGACGCTCGCACG
AATGGGCATTAAAACTCATCTTGCCTATCGCGTAGAGCAAGCAAAAAAATTCTTTACCGAGTTTCAGTACGATGCTTGTT
TAACAGATTTGAATCTCCCAGATGGCAACGGTCTGGACTTGGTTAAACATGTCACACAAAACTATCCCAACACACCGATT
GCAGTATTAACAGCGTATGGCAATATGGATATTGCAATTGCTGCATTAAAAGCAGGTGCTTTTGATTTTGTCAGTAAACC
TGTCAATCAAACTCACCTAGATCAATTGATTCAAAAAGCATTGAATCGACCACAGCCTGAACAAGAAGCTGCTGAGAGTG
CACTAGAAAATAAACTTCTGATTGGTCGTTCTACGCCTATTCAACAATTACGAATTGCTTTAAAGAAAATTGCTCGATCT
CAAGCCCCTGTCTTTATTACCGGTGAATCAGGGACAGGAAAAGAAGTTGTTGCCAATTTAGTTCATCGTCTGAGTAATCG
TAGCGAAGGACCTTTTATTGCGATCAACTGTGGTGCTATTCCAACAGAGTTAATGGAAAGTGAATTATTTGGTCATAAAA
AAGGCAGCTTCACAGGCGCAACCCAAGACAAACAAGGTCTCATTCTTTCCGCACATGGGGGTAGTTTATTCTTAGATGAG
ATCGCTGAATTACCCTTAAGTATGCAGGTAAAACTGCTTCGTGCTGTACAAGAAAAGAAAATTCGCCCTGTTGGCTCAGA
TCAAGAAATTGATGTTGATTTCCGTGTCATCAGTGCAAGTCATCAAGATCTCGAATTACTAGTACAACAAGGTCGCTTCA
GACAAGATTTATTTTTCCGTATACATGTAATGGATATTGTGCTTCCACCATTACGCGAACGTGGACAAGATATTTTACTA
CTTGCAAGCCACTTTATTCAAAAGATCAGCCAAGAATGGGAAGTATCGGTTAAAACCCTCTCTTCTCGCGCAGAACAGTT
CTTATTGCAGCAATATTTCCCAGGTAATGTTCGTGAACTTCGCAACATTATTGAACGTGCAATTACGCTCAGTGATGATG
AAACTATTGATCTAGCCCATCTTCAAACAGCTCCTCTACGTAGCCCTATTGCAACGCCAATAGTCTCATTTTCAACACAA
GATGAAAATAATGATCATGCGGTAAGCACTAGCCCTATGGGTTCTAAAAAGCTACCACCTGAAGGACTGGAGCTCTATTT
AGAAAATATTGAAAAAGAAATTCTTCTCAATGCACTAAATTTAACCCATTGGAATCGAACATTAGCGGCTAAAAAATTAG
GAATGACCTTCCGTTCTTTACGCTATCGTTTGAAGAAGTTTGGTTTAGATACCGAAGATGATGAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

83.368

100

0.834
  pilR Pseudomonas aeruginosa PAK

50.108

97.474

0.488