Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   O1450_RS06515 Genome accession   NZ_CP114256
Coordinates   1340139..1340846 (-) Length   235 a.a.
NCBI ID   WP_269230142.1    Uniprot ID   A0A9E9NPL2
Organism   Acinetobacter sp. TR11     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1335139..1345846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1450_RS06485 (O1450_06485) - 1335581..1336115 (+) 535 Protein_1249 IS5 family transposase -
  O1450_RS06490 (O1450_06490) - 1336171..1336972 (+) 802 WP_269228195.1 IS5 family transposase -
  O1450_RS06495 (O1450_06495) - 1336993..1337253 (-) 261 Protein_1251 integrase core domain-containing protein -
  O1450_RS06500 (O1450_06500) - 1337326..1338021 (+) 696 WP_269228460.1 IS1 family transposase -
  O1450_RS06505 (O1450_06505) - 1338061..1339002 (-) 942 Protein_1253 IS3 family transposase -
  O1450_RS06510 (O1450_06510) - 1339149..1339925 (-) 777 WP_269230141.1 M48 family metallopeptidase -
  O1450_RS06515 (O1450_06515) crp 1340139..1340846 (-) 708 WP_269230142.1 cAMP-activated global transcriptional regulator CRP Regulator
  O1450_RS06520 (O1450_06520) - 1340995..1341417 (+) 423 WP_269230143.1 OsmC family protein -
  O1450_RS06525 (O1450_06525) - 1341488..1342297 (-) 810 WP_269230144.1 peptidoglycan DD-metalloendopeptidase family protein -
  O1450_RS06530 (O1450_06530) clpB 1342551..1345130 (+) 2580 WP_269230145.1 ATP-dependent chaperone ClpB -
  O1450_RS06535 (O1450_06535) - 1345298..1345717 (+) 420 WP_269230146.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26550.10 Da        Isoelectric Point: 4.7361

>NTDB_id=765254 O1450_RS06515 WP_269230142.1 1340139..1340846(-) (crp) [Acinetobacter sp. TR11]
MTSNFSHLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFENNPQRTAEVRTRDICEIAEISYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLDDNAFSEDEFDDED

Nucleotide


Download         Length: 708 bp        

>NTDB_id=765254 O1450_RS06515 WP_269230142.1 1340139..1340846(-) (crp) [Acinetobacter sp. TR11]
ATGACTTCAAATTTTTCACATCTTAGCACTGATGCTTTGTCTCCAGGTCAATTACCTGAATCAGTTAAAGCATTGCTAAA
ACGTGCTCACATTAATAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACAGAATCAAAATCACTGTACTTAATAT
TAAAAGGTTCAGTATCAATCATATTACGTGAAGACGATGAGCGTGAGATTGTTGTTGCATACCTCAATCCAGGTGATTTC
TTTGGTGAAATGGGGTTGTTTGAAAATAACCCTCAACGTACTGCTGAAGTCCGTACTCGAGATATTTGCGAAATTGCAGA
AATCTCATATGAAAATTTCCACGAACTCAGCAAGCAATATCCTGACCTGAGCTATGCTGTATTTGCTCAGCTTGTTCGCC
GCCTGAAGAATACAACGCGTAAAGTCACTGACTTAGCATTTATCGACGTATCTGGTCGTATTGCTCGTTGTCTAATTGAC
TTATCTGCACAACCTGAGGCAATGATTCTACCGAATGGTCGTCAGATTCGTATTACACGTCAAGAAATTGGTCGTATTGT
GGGTTGTTCACGTGAAATGGTTGGTCGTGTTTTAAAAACACTTGAAGATCAAGGCATGATTCAAACTGATGGTAAAGCAA
TTTTAATTTTTGATACTTCTTTAGATGATAACGCATTTTCTGAAGATGAATTTGATGATGAGGATTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

92.34

100

0.923
  crp Vibrio cholerae strain A1552

47.596

88.511

0.421
  crp Haemophilus influenzae Rd KW20

49.223

82.128

0.404