Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   O1N17_RS01715 Genome accession   NZ_CP114183
Coordinates   355915..356508 (+) Length   197 a.a.
NCBI ID   WP_005480482.1    Uniprot ID   Q87L64
Organism   Vibrio parahaemolyticus strain PH1339     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350915..361508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1N17_RS01700 (O1N17_01700) - 351631..354201 (-) 2571 WP_005496567.1 PBP1A family penicillin-binding protein -
  O1N17_RS01705 (O1N17_01705) pilM 354344..355360 (+) 1017 WP_031855783.1 type IV pilus assembly protein PilM Machinery gene
  O1N17_RS01710 (O1N17_01710) pilN 355344..355922 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  O1N17_RS01715 (O1N17_01715) pilO 355915..356508 (+) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  O1N17_RS01720 (O1N17_01720) pilP 356498..357013 (+) 516 WP_015297395.1 pilus assembly protein PilP Machinery gene
  O1N17_RS01725 (O1N17_01725) pilQ 357045..358793 (+) 1749 WP_031855784.1 type IV pilus secretin PilQ family protein Machinery gene
  O1N17_RS01730 (O1N17_01730) aroK 358982..359500 (+) 519 WP_005381319.1 shikimate kinase AroK -
  O1N17_RS01735 (O1N17_01735) aroB 359532..360632 (+) 1101 WP_025794806.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23091.63 Da        Isoelectric Point: 4.8225

>NTDB_id=764861 O1N17_RS01715 WP_005480482.1 355915..356508(+) (pilO) [Vibrio parahaemolyticus strain PH1339]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=764861 O1N17_RS01715 WP_005480482.1 355915..356508(+) (pilO) [Vibrio parahaemolyticus strain PH1339]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAGTTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87L64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

94.211

96.447

0.909
  pilO Vibrio cholerae strain A1552

72.589

100

0.726