Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   O1N17_RS01720 Genome accession   NZ_CP114183
Coordinates   356498..357013 (+) Length   171 a.a.
NCBI ID   WP_015297395.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain PH1339     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351498..362013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1N17_RS01700 (O1N17_01700) - 351631..354201 (-) 2571 WP_005496567.1 PBP1A family penicillin-binding protein -
  O1N17_RS01705 (O1N17_01705) pilM 354344..355360 (+) 1017 WP_031855783.1 type IV pilus assembly protein PilM Machinery gene
  O1N17_RS01710 (O1N17_01710) pilN 355344..355922 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  O1N17_RS01715 (O1N17_01715) pilO 355915..356508 (+) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  O1N17_RS01720 (O1N17_01720) pilP 356498..357013 (+) 516 WP_015297395.1 pilus assembly protein PilP Machinery gene
  O1N17_RS01725 (O1N17_01725) pilQ 357045..358793 (+) 1749 WP_031855784.1 type IV pilus secretin PilQ family protein Machinery gene
  O1N17_RS01730 (O1N17_01730) aroK 358982..359500 (+) 519 WP_005381319.1 shikimate kinase AroK -
  O1N17_RS01735 (O1N17_01735) aroB 359532..360632 (+) 1101 WP_025794806.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18901.02 Da        Isoelectric Point: 10.4654

>NTDB_id=764862 O1N17_RS01720 WP_015297395.1 356498..357013(+) (pilP) [Vibrio parahaemolyticus strain PH1339]
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVETLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=764862 O1N17_RS01720 WP_015297395.1 356498..357013(+) (pilP) [Vibrio parahaemolyticus strain PH1339]
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTTGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGACGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAGGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGCGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGCAATAACGGTAAGGTCACGCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

83.041

100

0.83
  pilP Vibrio cholerae strain A1552

57.558

100

0.579