Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   O0R49_RS15950 Genome accession   NZ_CP114177
Coordinates   3017984..3018625 (-) Length   213 a.a.
NCBI ID   WP_048237325.1    Uniprot ID   -
Organism   Bacillus safensis strain PLA 1006     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3012984..3023625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R49_RS15915 (O0R49_15915) - 3014097..3014528 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  O0R49_RS15920 (O0R49_15920) - 3014528..3014869 (+) 342 WP_048237322.1 Na(+)/H(+) antiporter subunit C -
  O0R49_RS15925 (O0R49_15925) - 3014862..3016340 (+) 1479 WP_197197729.1 Na+/H+ antiporter subunit D -
  O0R49_RS15930 (O0R49_15930) - 3016347..3016826 (+) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  O0R49_RS15935 (O0R49_15935) - 3016826..3017107 (+) 282 WP_024425942.1 Na(+)/H(+) antiporter subunit F1 -
  O0R49_RS15940 (O0R49_15940) mnhG 3017091..3017465 (+) 375 WP_144472360.1 monovalent cation/H(+) antiporter subunit G -
  O0R49_RS15945 (O0R49_15945) - 3017571..3017960 (-) 390 WP_048237324.1 hotdog fold thioesterase -
  O0R49_RS15950 (O0R49_15950) comA 3017984..3018625 (-) 642 WP_048237325.1 response regulator transcription factor Regulator
  O0R49_RS15955 (O0R49_15955) comP 3018706..3020997 (-) 2292 WP_269195572.1 ATP-binding protein Regulator
  O0R49_RS15960 (O0R49_15960) comX 3021011..3021184 (-) 174 WP_024425944.1 competence pheromone ComX -
  O0R49_RS15965 (O0R49_15965) - 3021162..3022085 (-) 924 WP_269195573.1 polyprenyl synthetase family protein -
  O0R49_RS15970 (O0R49_15970) degQ 3022237..3022377 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  O0R49_RS15975 (O0R49_15975) - 3022883..3023239 (+) 357 WP_269195574.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24206.55 Da        Isoelectric Point: 4.5747

>NTDB_id=764727 O0R49_RS15950 WP_048237325.1 3017984..3018625(-) (comA) [Bacillus safensis strain PLA 1006]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILDTNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQEQQNDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=764727 O0R49_RS15950 WP_048237325.1 3017984..3018625(-) (comA) [Bacillus safensis strain PLA 1006]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGACGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAGCAAATCTTAGATACCAACCATCAAGTAAAAATTATC
ATTTACACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGTAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGCACATTACAAGGAGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGAGCAGCAAAATGATCACGACCTCTTAACCGAACGAGAGTGTTTGATC
CTTAGAGAAGTAGAAAAAGGATACACAAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723