Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OZ428_RS20395 Genome accession   NZ_CP114115
Coordinates   4363604..4365829 (-) Length   741 a.a.
NCBI ID   WP_269131098.1    Uniprot ID   -
Organism   Pseudomonas sp. GXZC     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4358604..4370829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ428_RS20360 (OZ428_20360) murB 4359009..4360028 (-) 1020 WP_269131095.1 UDP-N-acetylmuramate dehydrogenase -
  OZ428_RS20365 (OZ428_20365) - 4360025..4360489 (-) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  OZ428_RS20370 (OZ428_20370) kdsB 4360489..4361253 (-) 765 WP_269131096.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OZ428_RS20375 (OZ428_20375) - 4361250..4361435 (-) 186 WP_003174668.1 Trm112 family protein -
  OZ428_RS20380 (OZ428_20380) lpxK 4361460..4362470 (-) 1011 WP_269131097.1 tetraacyldisaccharide 4'-kinase -
  OZ428_RS20385 (OZ428_20385) - 4362470..4362898 (-) 429 WP_010209650.1 biopolymer transporter ExbD -
  OZ428_RS20390 (OZ428_20390) exbB 4362895..4363530 (-) 636 WP_033896796.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OZ428_RS20395 (OZ428_20395) comA 4363604..4365829 (-) 2226 WP_269131098.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OZ428_RS20400 (OZ428_20400) - 4365965..4366480 (+) 516 WP_033896799.1 DUF2062 domain-containing protein -
  OZ428_RS20405 (OZ428_20405) - 4366477..4367847 (-) 1371 WP_269131099.1 sensor histidine kinase -
  OZ428_RS20410 (OZ428_20410) - 4367834..4368562 (-) 729 WP_269131100.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80801.97 Da        Isoelectric Point: 10.6611

>NTDB_id=764434 OZ428_RS20395 WP_269131098.1 4363604..4365829(-) (comA) [Pseudomonas sp. GXZC]
MRTGMCAFALGLLALRFLPALPTTGWLIALLVLALMLLPFRTYPLAFFLFGLSWACMSAQWALDDRLRPVLDGQTRWVEG
RVIGLPQQTGDGVRFVLTDSRSRNARLPTRIRVSWHGGPPVRSGERWRLAITLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLAPAANAWRDGVRQRLLAVDAHGRESGLIALALGDGSGLTAADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGCWPRTWPWLPWACALAFATALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPFANLVAVPWISLVVMPLAL
LGSALLGLPFVGEGLLWLAGGALDVLFKGLAWLAGQMPAWIPAEVPLVYWLVSLLGAVLLLLPKGVPFRLLGLPMVLLAV
FPPRELVPHGQVEVVQLDVGQGQSLILRTRHHTLLYDAGPRSGSFDLGARVVLPSLRKLGVEELDMLLLSHADADHAGGA
AAVAKGMPIRRVVGGETDGLPLLLGTQPCVSGERWTWDGVTFELWQWPDAISGNAKSCVLQVQANGERLLLTGDIDRAAE
HALLASPLAVRTDWLQAPHHGSRSSSSWPFVERLAPRSVLISRGRNNAFGHPHPQVMERYRRLGSQVYDSAEQGAVRLQL
GAFTPPIVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=764434 OZ428_RS20395 WP_269131098.1 4363604..4365829(-) (comA) [Pseudomonas sp. GXZC]
ATGAGGACAGGGATGTGCGCGTTTGCGCTGGGGTTGCTGGCCTTGCGCTTTTTACCGGCGTTGCCGACGACCGGTTGGCT
GATTGCCTTGCTGGTGCTGGCCTTGATGTTGTTGCCGTTTCGCACGTATCCCTTGGCGTTTTTCCTGTTCGGGCTGAGTT
GGGCGTGCATGAGTGCGCAGTGGGCGCTGGATGACCGCCTCAGGCCGGTGTTGGATGGCCAGACGCGCTGGGTAGAAGGG
CGGGTCATCGGTTTGCCGCAACAGACGGGCGATGGCGTGCGCTTCGTGCTGACCGACAGTCGGTCGCGTAATGCCCGGTT
GCCCACGCGTATCCGGGTGTCCTGGCATGGCGGGCCGCCTGTGCGCAGTGGCGAACGCTGGCGCCTGGCAATCACCCTGA
AGCGGCCGGCCGGGTTGCTGAACTTCCATGGGTTTGATCAGGAGGCCTGGTTGCTCGCCCAGCGGATTGGCGCCACGGGC
ACGGTAAAGGACGGAGAACGCCTGGCACCGGCTGCCAATGCCTGGCGCGACGGTGTGCGTCAGCGCTTGCTTGCGGTGGA
CGCCCATGGCCGGGAATCAGGCCTGATTGCCCTGGCGTTGGGCGATGGCTCTGGATTGACCGCCGCTGATTGGCAGGTGC
TGCAGGACACAGGGACGGTGCATTTGCTGGTCATCTCCGGCCAGCACATCGGTTTGCTCGCGGGCTTGATCTACGGCTTG
ATCGCCGGCCTGGCGCGCTATGGATGCTGGCCTCGAACCTGGCCGTGGTTGCCATGGGCCTGTGCGCTGGCGTTCGCCAC
GGCGTTGGGCTACGGCTTGCTGGCCGGGTTTGGCGTGCCGGTGCAGCGCGCATGCGTGATGGTCGGGTTGGTGTTGTTGT
GGCGATTGCGCTTCCGTCACCTGGGGCTGTGGTGGCCTTTGTTGCTGGCGCTCAATGGGGTGTTGGTGTTGGAGCCGCTG
GCCAGTTTGCAGCCGGGGTTCTGGCTGTCCTTTGCGGCGGTGGCGGTGCTGATCCTGGCGTTTGGTGGCCGGCTGGGGCC
TTGGAGCCTGTGGCAAGCGTGGACCCGGCCGCAGTGGTTGATTGCCATCGGGTTGTTTCCGGTCTTGTTGGTGTTGGGGT
TGCCCATCAGCCTGAGTGCGCCGTTCGCTAACCTGGTGGCGGTGCCATGGATCAGCCTGGTGGTGATGCCGCTGGCTTTG
TTGGGCAGCGCATTGCTGGGGCTGCCCTTCGTGGGTGAAGGATTGCTGTGGTTGGCGGGTGGGGCACTGGATGTCTTGTT
CAAGGGCTTGGCGTGGCTCGCCGGGCAAATGCCCGCCTGGATTCCGGCCGAAGTGCCGTTGGTCTATTGGCTGGTGAGTC
TGCTGGGGGCCGTGCTGCTCCTGCTGCCCAAGGGCGTGCCATTTCGTCTGCTCGGATTGCCGATGGTACTGTTGGCGGTG
TTTCCCCCGCGAGAATTGGTCCCTCATGGACAAGTAGAGGTCGTGCAACTGGACGTCGGCCAGGGCCAATCGCTGATTCT
GCGCACCCGTCATCACACCTTGCTCTACGACGCCGGCCCGCGCTCCGGAAGTTTTGACCTGGGCGCACGCGTTGTCCTGC
CGTCTCTGCGAAAACTCGGGGTAGAGGAGTTGGACATGCTGCTGCTTAGCCACGCCGATGCCGATCATGCCGGTGGTGCG
GCAGCCGTTGCCAAGGGCATGCCGATCAGGCGCGTAGTGGGCGGAGAAACCGACGGTCTGCCTCTGTTGCTGGGCACTCA
GCCGTGCGTCAGCGGCGAGCGATGGACCTGGGACGGTGTGACCTTCGAACTCTGGCAGTGGCCGGACGCCATTAGTGGCA
ACGCGAAGTCCTGCGTCTTGCAGGTGCAGGCCAATGGCGAGCGCCTGCTGCTGACCGGTGATATTGACCGCGCCGCCGAA
CACGCCTTGCTCGCGTCACCCCTGGCGGTGCGCACTGATTGGCTGCAAGCGCCGCACCACGGCAGTCGCAGTTCTTCGTC
CTGGCCCTTTGTGGAACGGCTTGCTCCGCGATCCGTGCTGATCTCGCGAGGGCGCAACAACGCGTTCGGCCATCCCCATC
CACAGGTGATGGAACGCTACCGGCGGTTGGGCAGCCAGGTGTATGACAGTGCCGAGCAGGGCGCCGTGCGTCTGCAGTTG
GGGGCTTTTACGCCGCCGATTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAGCGGTTACCTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-651)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.111

97.166

0.594
  comA Ralstonia pseudosolanacearum GMI1000

35.464

100

0.382