Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OZ428_RS20390 Genome accession   NZ_CP114115
Coordinates   4362895..4363530 (-) Length   211 a.a.
NCBI ID   WP_033896796.1    Uniprot ID   -
Organism   Pseudomonas sp. GXZC     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4357895..4368530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ428_RS20355 (OZ428_20355) - 4358275..4358946 (+) 672 WP_016977342.1 Bax inhibitor-1/YccA family protein -
  OZ428_RS20360 (OZ428_20360) murB 4359009..4360028 (-) 1020 WP_269131095.1 UDP-N-acetylmuramate dehydrogenase -
  OZ428_RS20365 (OZ428_20365) - 4360025..4360489 (-) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  OZ428_RS20370 (OZ428_20370) kdsB 4360489..4361253 (-) 765 WP_269131096.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OZ428_RS20375 (OZ428_20375) - 4361250..4361435 (-) 186 WP_003174668.1 Trm112 family protein -
  OZ428_RS20380 (OZ428_20380) lpxK 4361460..4362470 (-) 1011 WP_269131097.1 tetraacyldisaccharide 4'-kinase -
  OZ428_RS20385 (OZ428_20385) - 4362470..4362898 (-) 429 WP_010209650.1 biopolymer transporter ExbD -
  OZ428_RS20390 (OZ428_20390) exbB 4362895..4363530 (-) 636 WP_033896796.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OZ428_RS20395 (OZ428_20395) comA 4363604..4365829 (-) 2226 WP_269131098.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OZ428_RS20400 (OZ428_20400) - 4365965..4366480 (+) 516 WP_033896799.1 DUF2062 domain-containing protein -
  OZ428_RS20405 (OZ428_20405) - 4366477..4367847 (-) 1371 WP_269131099.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.05 Da        Isoelectric Point: 7.3615

>NTDB_id=764433 OZ428_RS20390 WP_033896796.1 4362895..4363530(-) (exbB) [Pseudomonas sp. GXZC]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWAWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=764433 OZ428_RS20390 WP_033896796.1 4362895..4363530(-) (exbB) [Pseudomonas sp. GXZC]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCGTGACCCCCGAGCATTTACTGGGGCAGGTCTGGGCCTGGATCAAGAACA
AGCAGCTCGACAAGGAAAAGCTCAAGGAACTGCGCGCCAATTCCCCGCTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGCGTCATCCATGAACTGGAACGCTACAT
CAACGCCCTCGGCACCATTGCCGCCATGGCGCCGTTGCTCGGCTTGCTCGGCACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCCGGCATGACCACCAACGCAGCCGTACTGGCCGGTGGTATTTCCAAGGCGCTGATCACCACGGCC
GCAGGCCTGATGGTCGGTATCCCTTCAGTGTTCTTCCACCGTTTCCTGCAACGTCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848