Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   QM317_RS01630 Genome accession   NZ_CP125861
Coordinates   364852..366912 (-) Length   686 a.a.
NCBI ID   WP_001151497.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 12-03119     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 359852..371912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM317_RS01600 (QM317_01600) rnc 359862..360593 (-) 732 WP_000043237.1 ribonuclease III -
  QM317_RS01605 (QM317_01605) - 360709..360942 (-) 234 WP_000426914.1 acyl carrier protein -
  QM317_RS01610 (QM317_01610) fabG 361440..362174 (-) 735 WP_000167269.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  QM317_RS01615 (QM317_01615) fabD 362167..363093 (-) 927 WP_000047343.1 ACP S-malonyltransferase -
  QM317_RS01620 (QM317_01620) plsX 363086..364072 (-) 987 WP_000239744.1 phosphate acyltransferase PlsX -
  QM317_RS01625 (QM317_01625) fapR 364077..364649 (-) 573 WP_001548538.1 transcription factor FapR -
  QM317_RS01630 (QM317_01630) recG 364852..366912 (-) 2061 WP_001151497.1 ATP-dependent DNA helicase RecG Machinery gene
  QM317_RS01635 (QM317_01635) fakA 367102..368748 (-) 1647 WP_000623903.1 fatty acid kinase catalytic subunit FakA -
  QM317_RS01640 (QM317_01640) - 368763..369137 (-) 375 WP_000171418.1 Asp23/Gls24 family envelope stress response protein -
  QM317_RS01645 (QM317_01645) rpmB 369580..369768 (+) 189 WP_000517908.1 50S ribosomal protein L28 -
  QM317_RS01650 (QM317_01650) - 370149..370790 (-) 642 WP_000547905.1 thiamine diphosphokinase -
  QM317_RS01655 (QM317_01655) rpe 370797..371441 (-) 645 WP_000164333.1 ribulose-phosphate 3-epimerase -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78343.90 Da        Isoelectric Point: 6.1562

>NTDB_id=764326 QM317_RS01630 WP_001151497.1 364852..366912(-) (recG) [Staphylococcus aureus strain 12-03119]
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGR
NKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSQGTQTQENADVQLEPVYRIKEG
IKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKS
SDEAIEIDYDIDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMV
PTEILAEQHAESLMALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVN
QRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVIC
PLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYD
ADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVAN
LVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=764326 QM317_RS01630 WP_001151497.1 364852..366912(-) (recG) [Staphylococcus aureus strain 12-03119]
TTGGCTAAAGTAAACTTAATAGAAAGTCCATATTCTCTTTTACAATTAAAAGGTATAGGTCCTAAGAAAATAGAAGTATT
GCAACAACTAAATATTCATACAGTGGAAGATCTTGTTCTTTATTTGCCAACTAGATATGAAGATAATACAGTGATTGATT
TGAATCAAGCAGAAGATCAATCTAACGTTACGATAGAAGGACAAGTATATACAGCTCCAGTAGTTGCATTTTTTGGAAGA
AATAAATCAAAATTAACCGTTCATTTAATGGTAAATAATATTGCTGTCAAATGTATTTTTTTCAATCAACCGTATTTAAA
AAAGAAAATCGAATTAAATCAAACTATAACTGTTAAAGGTAAGTGGAATAGGGTTAAACAGGAAATTACTGGTAATAGGG
TTTTCTTTAATTCACAAGGGACACAAACTCAAGAAAACGCAGATGTTCAATTAGAACCAGTCTATCGTATTAAGGAAGGT
ATTAAACAAAAGCAAATACGAGACCAAATTAGACAAGCGTTAAATGATGTGACAATTCATGAATGGTTAACTGATGAACT
AAGAGAAAAATATAAATTAGAGACCTTGGACTTTACTTTGAACACATTACATCATCCTAAAAGTAAAGAGGATTTATTAC
GTGCTCGTAGAACCTATGCATTTACTGAACTGTTTTTATTCGAATTACGTATGCAATGGCTAAATAGATTAGAAAAGTCA
TCTGACGAAGCAATTGAAATTGATTATGACATAGACCAAGTTAAATCATTTATTGATCGTTTACCTTTTGAACTAACTGA
AGCACAGAAATCCAGTGTTAATGAAATTTTTAGAGATTTAAAAGCACCAATACGTATGCATCGATTACTTCAAGGTGATG
TAGGTTCAGGAAAAACAGTAGTTGCTGCAATTTGTATGTATGCGTTAAAAACGGCTGGTTATCAATCAGCATTGATGGTA
CCAACTGAAATTTTAGCAGAGCAACATGCTGAAAGTTTAATGGCTTTATTTGGAGATTCTATGAACGTTGCATTGTTAAC
TGGGTCAGTAAAAGGTAAGAAACGAAAGATACTTTTAGAACAACTTGAAAATGGTACGATTGATTGTTTAATTGGAACCC
ATGCTTTGATTCAAGATGATGTGATTTTCCATAATGTTGGTTTAGTAATTACAGATGAACAACATCGATTTGGTGTGAAT
CAACGCCAGCTTTTAAGAGAAAAAGGTGCAATGACGAATGTGTTATTTATGACAGCAACGCCGATACCAAGAACACTAGC
AATATCAGTTTTTGGTGAGATGGATGTGTCTTCAATTAAACAATTACCAAAAGGTCGTAAACCTATCATTACTACTTGGG
CAAAGCATGAGCAATACGATAAAGTTTTGATGCAAATGACCTCAGAGTTGAAAAAAGGTCGTCAAGCATATGTCATTTGC
CCGCTTATAGAAAGTTCTGAGCATCTCGAAGATGTTCAAAATGTTGTCGCATTGTACGAGTCTTTACAACAGTATTATGG
TGTTTCCCGTGTAGGGTTATTGCATGGTAAGTTGTCTGCCGATGAAAAAGATGAGGTCATGCAAAAGTTTAGCAATCATG
AGATAGATGTTTTAGTTTCTACTACTGTTGTTGAAGTAGGTGTTAATGTACCGAATGCAACTTTTATGATGATTTATGAT
GCGGATCGCTTTGGATTATCAACTTTACATCAGTTACGCGGACGTGTGGGTAGAAGTGACCAGCAAAGTTACTGTGTTTT
AATTGCATCCCCTAAAACAGAAACAGGAATTGAAAGAATGACAATTATGACACAAACAACGGATGGATTTGAATTGAGTG
AACGAGACTTAGAAATGCGTGGTCCTGGCGATTTCTTTGGTGTTAAACAAAGTGGATTGCCAGATTTCTTAGTTGCCAAT
TTAGTTGAAGATTATCGTATGTTAGAAGTTGCTCGTGATGAAGCAGCTGAACTTATTCAATCTGGCGTATTCTTTGAAAA
TACGTATCAACATTTACGTCATTTTGTTGAAGAAAATTTATTACATCGTAGTTTTGACTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(464-579)

RecG wedge domain (RecG_wedge)

(16-175)

DEAD/DEAH box helicase (DEAD)

(267-422)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(606-663)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

53.073

97.23

0.516
  recG/mmsA Streptococcus pneumoniae R6

50.388

94.023

0.474
  recG/mmsA Streptococcus pneumoniae R36A

50.388

94.023

0.474
  recG Neisseria meningitidis strain C311

39.82

97.376

0.388