Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   H7R82_RS07265 Genome accession   NZ_AP022055
Coordinates   1582168..1584387 (+) Length   739 a.a.
NCBI ID   WP_182942602.1    Uniprot ID   -
Organism   Pseudomonas putida strain WP4-W18-CRE-03     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1577168..1589387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R82_RS07245 (WP4W18C03_14170) - 1579027..1579650 (+) 624 WP_043214375.1 glutathione S-transferase -
  H7R82_RS07250 (WP4W18C03_14180) - 1579791..1580723 (+) 933 WP_070573244.1 ABC transporter ATP-binding protein -
  H7R82_RS07255 (WP4W18C03_14190) - 1580720..1581499 (+) 780 WP_043214381.1 ABC transporter permease -
  H7R82_RS07260 (WP4W18C03_14200) - 1581383..1582024 (-) 642 WP_139205743.1 DUF2062 domain-containing protein -
  H7R82_RS07265 (WP4W18C03_14210) comA 1582168..1584387 (+) 2220 WP_182942602.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  H7R82_RS07270 (WP4W18C03_14220) exbB 1584498..1585133 (+) 636 WP_043214385.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  H7R82_RS07275 (WP4W18C03_14230) - 1585130..1585564 (+) 435 WP_043214387.1 ExbD/TolR family protein -
  H7R82_RS07280 (WP4W18C03_14240) lpxK 1585564..1586574 (+) 1011 WP_182942604.1 tetraacyldisaccharide 4'-kinase -
  H7R82_RS07285 (WP4W18C03_14250) - 1586617..1586802 (+) 186 WP_003247142.1 Trm112 family protein -
  H7R82_RS07290 (WP4W18C03_14260) kdsB 1586799..1587563 (+) 765 WP_070573253.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H7R82_RS07295 (WP4W18C03_14270) - 1587563..1588027 (+) 465 WP_182942606.1 low molecular weight protein-tyrosine-phosphatase -
  H7R82_RS07300 (WP4W18C03_14280) murB 1588024..1589040 (+) 1017 WP_043214395.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 79896.84 Da        Isoelectric Point: 10.6082

>NTDB_id=76424 H7R82_RS07265 WP_182942602.1 1582168..1584387(+) (comA) [Pseudomonas putida strain WP4-W18-CRE-03]
MRTGMFALALGLLSLRFMPALPSVGAMLTMLLLGVVCLPGRARAVGCFLLGMSWACWSAQNALDDRLESALDGRTLWLEG
RVVGLPALRGQSVRFELADPTSRRTALPRRLQLNWFEGPQLSAGEYWRLAVTLKRPHGLLNPHGPDWEALFLARRIGAVG
TVKAGQLLAPATNNWRDAVRQRLLAVDAQGREGALAALVLGDGSGLARSEWQALQATGTVHLMVISGQHIGLVAGLVYGL
VAWLARLGLWPQRLPWLPWACALSLVSALGYGGLAGFGVPVQRACLMLAMVLLWRLHFSHLGALLPLLAALCGVLLIEPL
ASLLPGFWLSFAAVAVLVFCFAGRLGGWRPWQAWSRAQWVVAVGLLPALLALGLPISLTAPLANLLAVPWISFAVLPLAL
LGSALLPLGQPGELLLWWAGGLLEILFQQLALLGQWRPAWEPQALTPWAGLLVGLGAALLLLPRGVPLRGLGGVMLMALW
APREPVPQGQVEVLQLDVGQGLAVLLRTRTHSLLYDAGPAKGDMDLGDRVVLPTLRKLGVKHLDLMLISHGHADHAGGAA
AIGRGLPLGRVLAGEPEQLPEALRARRCVSGERWHWDGVDFMLWQWAGGPAGNERSCALLVQAQGERLLLAGDMEAGAER
AWLAATDAPRIDWLQAPHHGSRSSSTEPFIRATSPRGVMISRGRYNSFGHPHPQVMERYRRYGLSVHDTAIEGALRLRLG
THGEVEGLRAQRRFWRQGQ

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=76424 H7R82_RS07265 WP_182942602.1 1582168..1584387(+) (comA) [Pseudomonas putida strain WP4-W18-CRE-03]
ATGCGCACAGGGATGTTCGCGCTCGCACTCGGGCTGTTGAGCCTGCGTTTTATGCCTGCATTGCCATCGGTCGGCGCGAT
GCTGACGATGCTGTTGCTCGGCGTGGTTTGTCTTCCTGGCAGAGCCAGGGCTGTAGGTTGCTTTCTCCTCGGAATGAGCT
GGGCCTGTTGGTCGGCGCAAAACGCCTTGGATGATCGTCTGGAATCCGCGTTGGATGGGCGAACCCTGTGGCTGGAGGGG
CGGGTGGTGGGATTGCCCGCACTACGAGGGCAATCCGTGCGCTTCGAGCTTGCGGACCCTACCTCGCGTCGCACCGCCTT
GCCGCGTCGGCTTCAGTTGAACTGGTTCGAGGGGCCACAACTGAGCGCCGGCGAGTACTGGCGCCTGGCTGTCACGCTCA
AGCGACCCCATGGCCTGCTCAACCCCCATGGTCCCGACTGGGAGGCGCTTTTTCTCGCGCGGCGGATCGGCGCCGTGGGC
ACCGTCAAGGCTGGGCAGTTATTGGCACCCGCCACGAACAACTGGCGCGACGCGGTGCGCCAACGCTTGCTGGCAGTCGA
TGCCCAGGGGCGCGAAGGTGCCCTGGCGGCGCTGGTCCTGGGGGATGGCTCGGGGCTTGCACGCTCGGAATGGCAGGCGT
TGCAGGCCACAGGTACGGTGCACTTGATGGTGATTTCCGGCCAGCACATCGGCTTGGTGGCCGGGCTGGTCTATGGCTTG
GTGGCGTGGCTGGCGCGCCTGGGCCTGTGGCCCCAGCGTCTGCCATGGTTGCCTTGGGCGTGCGCGCTGAGTCTGGTTTC
AGCGTTGGGGTACGGCGGGCTCGCAGGGTTCGGTGTGCCGGTGCAGCGAGCTTGCCTGATGCTGGCGATGGTCCTGCTCT
GGCGTCTGCACTTCAGTCATCTGGGGGCGCTCCTGCCGTTGCTGGCCGCCCTGTGTGGCGTGCTGCTGATCGAACCGTTG
GCGAGCCTGTTGCCCGGGTTCTGGCTATCGTTCGCCGCAGTCGCGGTTCTGGTGTTCTGCTTTGCCGGGCGCCTCGGCGG
CTGGCGACCGTGGCAAGCCTGGAGCAGGGCGCAATGGGTGGTCGCGGTGGGCTTGTTGCCGGCCTTGCTGGCGCTGGGTT
TGCCGATCAGCCTGACAGCGCCGCTGGCCAATCTGTTGGCGGTACCCTGGATCAGTTTTGCCGTGTTGCCGTTGGCGCTG
CTGGGCAGTGCGCTCTTGCCGCTGGGCCAGCCCGGTGAGCTGTTGCTGTGGTGGGCAGGCGGGTTGCTGGAAATATTGTT
TCAGCAGTTGGCGCTGTTGGGGCAATGGCGTCCGGCCTGGGAGCCCCAGGCATTGACGCCGTGGGCGGGACTGCTGGTCG
GATTGGGGGCGGCGTTGCTGTTGCTGCCCCGGGGTGTGCCGCTGCGTGGACTGGGGGGCGTGATGCTGATGGCTCTGTGG
GCTCCACGGGAGCCAGTGCCGCAGGGGCAGGTTGAAGTCCTGCAACTGGATGTGGGGCAGGGCCTGGCCGTGCTGCTGCG
AACCCGCACGCACAGCCTGCTTTACGATGCCGGCCCCGCCAAGGGTGACATGGACCTGGGGGACCGGGTGGTGTTGCCGA
CCTTGCGCAAGCTTGGCGTCAAGCACCTGGATCTGATGCTGATCAGTCATGGCCACGCCGATCATGCTGGCGGCGCAGCG
GCTATCGGGCGCGGTCTGCCGCTGGGTAGGGTGCTTGCGGGGGAGCCTGAACAATTACCGGAGGCTTTGCGGGCACGCCG
GTGCGTCAGTGGCGAGCGCTGGCACTGGGATGGGGTGGACTTCATGCTTTGGCAGTGGGCAGGGGGGCCGGCCGGTAACG
AGCGTTCCTGTGCGCTGCTGGTACAGGCCCAGGGCGAGCGGTTGTTACTGGCCGGCGATATGGAGGCTGGTGCCGAGCGG
GCTTGGCTGGCAGCGACCGATGCGCCGCGCATCGACTGGTTGCAGGCGCCGCACCATGGCAGTCGCAGCTCGTCCACTGA
GCCGTTCATCCGCGCTACGTCGCCAAGGGGCGTGATGATTTCCCGGGGGCGCTACAACAGCTTCGGTCATCCGCATCCGC
AGGTCATGGAGCGTTACCGGCGGTACGGGTTGAGCGTTCATGACACCGCGATCGAAGGCGCTTTGCGCCTACGCCTGGGC
ACCCATGGAGAGGTCGAGGGACTGCGGGCGCAGCGGCGGTTCTGGCGACAGGGGCAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(27-166)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.554

97.294

0.57
  comA Ralstonia pseudosolanacearum GMI1000

35.058

100

0.367

Multiple sequence alignment