Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   H7R82_RS07270 Genome accession   NZ_AP022055
Coordinates   1584498..1585133 (+) Length   211 a.a.
NCBI ID   WP_043214385.1    Uniprot ID   -
Organism   Pseudomonas putida strain WP4-W18-CRE-03     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1579498..1590133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R82_RS07250 (WP4W18C03_14180) - 1579791..1580723 (+) 933 WP_070573244.1 ABC transporter ATP-binding protein -
  H7R82_RS07255 (WP4W18C03_14190) - 1580720..1581499 (+) 780 WP_043214381.1 ABC transporter permease -
  H7R82_RS07260 (WP4W18C03_14200) - 1581383..1582024 (-) 642 WP_139205743.1 DUF2062 domain-containing protein -
  H7R82_RS07265 (WP4W18C03_14210) comA 1582168..1584387 (+) 2220 WP_182942602.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  H7R82_RS07270 (WP4W18C03_14220) exbB 1584498..1585133 (+) 636 WP_043214385.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  H7R82_RS07275 (WP4W18C03_14230) - 1585130..1585564 (+) 435 WP_043214387.1 ExbD/TolR family protein -
  H7R82_RS07280 (WP4W18C03_14240) lpxK 1585564..1586574 (+) 1011 WP_182942604.1 tetraacyldisaccharide 4'-kinase -
  H7R82_RS07285 (WP4W18C03_14250) - 1586617..1586802 (+) 186 WP_003247142.1 Trm112 family protein -
  H7R82_RS07290 (WP4W18C03_14260) kdsB 1586799..1587563 (+) 765 WP_070573253.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H7R82_RS07295 (WP4W18C03_14270) - 1587563..1588027 (+) 465 WP_182942606.1 low molecular weight protein-tyrosine-phosphatase -
  H7R82_RS07300 (WP4W18C03_14280) murB 1588024..1589040 (+) 1017 WP_043214395.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22828.07 Da        Isoelectric Point: 7.3616

>NTDB_id=76425 H7R82_RS07270 WP_043214385.1 1584498..1585133(+) (exbB) [Pseudomonas putida strain WP4-W18-CRE-03]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYIGTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANPAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=76425 H7R82_RS07270 WP_043214385.1 1584498..1585133(+) (exbB) [Pseudomonas putida strain WP4-W18-CRE-03]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCTATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTGACCCCACCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGTTGGGCGAAATCCTCGCTGCGGGCCTGGCCAAC
TCCCGCCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCCCGGGTCATCCATGAGTTGGAGCGCTATAT
CGGTACATTGGGCACCATCGCCGCGATGGCCCCCTTGCTCGGCCTTCTGGGTACGGTGCTAGGCATGATCGATATCTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCCAACCCGGCCGTTCTCGCGGGTGGTATTTCCAAGGCCCTGGTCACCACAGCC
GCCGGCCTGATGGTGGGGATCCCGGCGGTCTTCTTCCACCGGTTCCTGCAGCGACGCATCGATGAGCTGGTCGTCGGCAT
GGAGCAGGAGGCAATCAAGCTGGTCGAGGTGCTGCAAGGCGATCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.517

100

0.815

Multiple sequence alignment