Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QLQ05_RS08790 Genome accession   NZ_CP125762
Coordinates   1657314..1657931 (+) Length   205 a.a.
NCBI ID   WP_004398514.1    Uniprot ID   P39694
Organism   Bacillus subtilis strain KRS015     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1652314..1662931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ05_RS08755 aroE 1652972..1653814 (+) 843 WP_003229967.1 shikimate dehydrogenase -
  QLQ05_RS08760 yhbY 1653808..1654098 (+) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  QLQ05_RS08765 nadD 1654110..1654679 (+) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  QLQ05_RS08770 yqeK 1654669..1655229 (+) 561 WP_004399059.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QLQ05_RS08775 rsfS 1655247..1655603 (+) 357 WP_003229971.1 ribosome silencing factor -
  QLQ05_RS08780 yqeM 1655600..1656343 (+) 744 WP_003229973.1 class I SAM-dependent methyltransferase -
  QLQ05_RS08785 comER 1656409..1657230 (-) 822 WP_004398597.1 late competence protein ComER -
  QLQ05_RS08790 comEA 1657314..1657931 (+) 618 WP_004398514.1 competence protein ComEA Machinery gene
  QLQ05_RS08795 comEB 1657998..1658567 (+) 570 WP_003229978.1 ComE operon protein 2 -
  QLQ05_RS08800 comEC 1658571..1660901 (+) 2331 WP_009967776.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QLQ05_RS08805 yqzM 1660941..1661075 (-) 135 WP_003229983.1 YqzM family protein -
  QLQ05_RS08810 - 1661116..1661265 (+) 150 WP_003229985.1 hypothetical protein -
  QLQ05_RS08815 holA 1661305..1662348 (+) 1044 WP_003229987.1 DNA polymerase III subunit delta -
  QLQ05_RS08820 rpsT 1662363..1662629 (-) 267 WP_003229989.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21769.45 Da        Isoelectric Point: 4.7220

>NTDB_id=763869 QLQ05_RS08790 WP_004398514.1 1657314..1657931(+) (comEA) [Bacillus subtilis strain KRS015]
MNWLNQHKKAIILAASAAVFTAIMIFLATGKNKEPVKQAVPTETENTVVKQEANNDESNETIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGGSVQSDGGKGALVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=763869 QLQ05_RS08790 WP_004398514.1 1657314..1657931(+) (comEA) [Bacillus subtilis strain KRS015]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTATTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAACGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGGCGGAGGGTCTG
TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAGGAAAACGGTCGTTTCCAAACAATTGAAGATATCACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(142-203)

SLBB domain (SLBB)

(63-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 8DFK

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comEA Staphylococcus aureus MW2

37.273

100

0.4
  comEA Staphylococcus aureus N315

36.364

100

0.39