Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   OIY87_RS10415 Genome accession   NZ_CP113954
Coordinates   2081471..2082835 (-) Length   454 a.a.
NCBI ID   WP_269724973.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain XH2168     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 2076471..2087835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS10380 (OIY87_11695) rmuC 2076640..2077914 (-) 1275 WP_012962509.1 DNA recombination protein RmuC -
  OIY87_RS10385 (OIY87_11700) - 2077916..2078545 (-) 630 WP_009854988.1 thiamine diphosphokinase -
  OIY87_RS10390 (OIY87_11705) rpe 2078538..2079200 (-) 663 WP_009854989.1 ribulose-phosphate 3-epimerase -
  OIY87_RS10395 (OIY87_11710) rsgA 2079207..2080079 (-) 873 WP_269724971.1 ribosome small subunit-dependent GTPase A -
  OIY87_RS10410 (OIY87_11725) - 2081139..2081339 (-) 201 WP_269724972.1 bacteriocin -
  OIY87_RS10415 (OIY87_11730) comD/comD3 2081471..2082835 (-) 1365 WP_269724973.1 sensor histidine kinase Regulator
  OIY87_RS10420 (OIY87_11735) comE/comE2 2082848..2083576 (-) 729 WP_012962512.1 LytR/AlgR family response regulator transcription factor Regulator
  OIY87_RS10425 (OIY87_11740) - 2083675..2083968 (-) 294 WP_252521385.1 bacteriocin immunity protein -
  OIY87_RS10430 (OIY87_11745) - 2084019..2084171 (-) 153 WP_231873055.1 hypothetical protein -
  OIY87_RS10435 (OIY87_11750) - 2084518..2084829 (-) 312 WP_269724974.1 bacteriocin immunity protein -
  OIY87_RS10440 (OIY87_11755) - 2084841..2084990 (-) 150 WP_269724975.1 bacteriocin -
  OIY87_RS10445 (OIY87_11760) - 2085075..2085299 (-) 225 WP_269724976.1 DUF3884 family protein -
  OIY87_RS10450 (OIY87_11765) - 2085410..2085625 (-) 216 WP_074658217.1 hypothetical protein -
  OIY87_RS10455 (OIY87_11770) - 2085913..2086050 (+) 138 WP_009854999.1 hypothetical protein -
  OIY87_RS10460 (OIY87_11775) - 2086072..2087379 (-) 1308 WP_269724977.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 52374.71 Da        Isoelectric Point: 5.1864

>NTDB_id=763844 OIY87_RS10415 WP_269724973.1 2081471..2082835(-) (comD/comD3) [Streptococcus gallolyticus strain XH2168]
MDLRSLIAFLETFVTFLGYAILFKSITKYRLAVWEWLVSVLVLPILASGFAVVMLLCFADMDSFKTVMIKNIVVLLWFTT
LSYRHDRSLLPRYHIFYGLFPVAVEDILLRTVSYSLAALFSTRINAIGQSWIAHVDIWTPVPIYFMASKLLEIDISNVKK
TLQNYLSSTSLILINLLMAFYFFGIDYVALKSPFGSVGSESFRERVTFVYIILLFLFLFYLNYKYVREQEIELQRQQELE
LISLENYSKHVESLYQEVRSFRHDYANILLSIGESIERNDLETIKKIYNDITNDSEKLVRNSKFDLTRLSHISNSAIKSL
MSAKFLEAENLGITITLEVPEVVECPKIPLITYIRILAILFDNAIEAAVLSDVPKISVANFYQDDNFVFMIENSTKEDSI
PIDNIYQKGYSSKGDNRGIGLATVSEFQQEYDNLSIETSSSNHLFRQILRIYES

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=763844 OIY87_RS10415 WP_269724973.1 2081471..2082835(-) (comD/comD3) [Streptococcus gallolyticus strain XH2168]
TTGGATTTAAGGAGTTTAATTGCGTTTTTAGAAACCTTTGTCACGTTTTTGGGGTATGCTATCCTATTTAAGAGCATTAC
CAAGTACCGACTTGCCGTTTGGGAATGGCTAGTATCTGTTTTAGTGTTGCCAATTCTTGCATCAGGCTTTGCGGTTGTCA
TGCTTTTGTGCTTTGCGGATATGGACAGTTTTAAAACTGTCATGATTAAAAATATTGTGGTGTTGTTGTGGTTTACCACC
TTATCTTACCGTCATGATAGGTCCTTGCTACCAAGGTATCATATTTTTTATGGGCTTTTCCCAGTTGCGGTAGAGGATAT
TTTGCTTAGGACGGTGTCTTATTCATTAGCAGCGCTATTTTCCACAAGAATCAATGCTATCGGACAGTCATGGATTGCTC
ATGTTGACATCTGGACACCCGTTCCGATTTATTTTATGGCTTCAAAATTACTGGAAATTGATATTTCAAATGTCAAAAAG
ACCTTGCAAAATTACCTTAGCTCGACAAGTCTTATCTTGATTAATTTGCTAATGGCTTTCTATTTTTTTGGAATAGATTA
TGTCGCTTTGAAAAGTCCATTTGGTAGCGTAGGTAGCGAATCGTTTAGAGAAAGAGTTACTTTTGTTTACATTATTCTTC
TTTTTCTATTTTTGTTCTATCTGAATTACAAATACGTCCGTGAACAAGAGATAGAGTTACAAAGGCAGCAGGAGCTAGAA
TTAATTTCGCTGGAAAATTACAGCAAACATGTGGAAAGTTTGTACCAAGAGGTTAGAAGTTTCAGGCATGACTATGCCAA
TATTTTGTTGAGTATAGGAGAAAGTATCGAGCGAAATGACTTGGAAACTATCAAAAAAATCTACAATGACATTACTAATG
ATTCTGAGAAGCTCGTCAGAAATAGCAAATTCGATTTGACACGCTTGTCTCATATTTCAAATAGTGCCATCAAAAGTTTG
ATGTCTGCTAAATTTCTAGAGGCTGAAAATCTCGGAATCACCATTACTTTGGAAGTTCCTGAAGTCGTGGAGTGTCCCAA
AATTCCACTTATTACCTACATTCGCATCCTTGCTATCTTGTTTGATAATGCGATTGAAGCTGCGGTGTTATCAGATGTTC
CTAAAATATCCGTAGCGAATTTTTATCAAGATGATAACTTTGTTTTTATGATTGAAAATTCAACCAAAGAAGATAGTATT
CCGATTGATAATATTTATCAAAAAGGCTATTCAAGCAAAGGAGACAATCGTGGTATTGGCTTAGCAACAGTTAGTGAATT
TCAGCAAGAATATGACAATCTCTCCATTGAAACAAGCAGCTCAAATCACCTCTTTAGACAAATTTTGAGAATCTATGAAT
CCTAG

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(354-449)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

50.109

100

0.504
  comD/comD2 Streptococcus equinus JB1

57.372

68.722

0.394