Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OYW20_RS17790 Genome accession   NZ_CP113949
Coordinates   3971044..3973260 (-) Length   738 a.a.
NCBI ID   WP_268797250.1    Uniprot ID   -
Organism   Pseudomonas huanghezhanensis strain BSw22131     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3966044..3978260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OYW20_RS17755 - 3966159..3966755 (-) 597 WP_268797243.1 NTP transferase domain-containing protein -
  OYW20_RS17760 murB 3966832..3967851 (-) 1020 WP_268797244.1 UDP-N-acetylmuramate dehydrogenase -
  OYW20_RS17765 kdsB 3967898..3968662 (-) 765 WP_268797245.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OYW20_RS17770 - 3968659..3968844 (-) 186 WP_268797246.1 Trm112 family protein -
  OYW20_RS17775 lpxK 3968862..3969857 (-) 996 WP_268797247.1 tetraacyldisaccharide 4'-kinase -
  OYW20_RS17780 - 3969857..3970288 (-) 432 WP_268797248.1 biopolymer transporter ExbD -
  OYW20_RS17785 exbB 3970285..3970959 (-) 675 WP_268797249.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OYW20_RS17790 comA 3971044..3973260 (-) 2217 WP_268797250.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OYW20_RS17795 - 3973413..3973934 (+) 522 WP_268797251.1 DUF2062 domain-containing protein -
  OYW20_RS17800 - 3974028..3974807 (-) 780 WP_268797252.1 ABC transporter permease -
  OYW20_RS17805 - 3974804..3975736 (-) 933 WP_268797253.1 ABC transporter ATP-binding protein -
  OYW20_RS17810 - 3975968..3976591 (-) 624 WP_268797254.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80788.82 Da        Isoelectric Point: 8.4944

>NTDB_id=763763 OYW20_RS17790 WP_268797250.1 3971044..3973260(-) (comA) [Pseudomonas huanghezhanensis strain BSw22131]
MRTGMLALALGLLALRFLPTLPPVWLLLLMPVVALMLLPFRTYPLAFFLFGLAWACASAQWALDDRLAPRLDGQTLWLQG
QIVGLPHSGEEVVRFELENPQSRRTRLPQKIRVAWYGGPAVRSGETWRLAVKLKAPGGLVNPDAFDYEAWLLAQRIGATG
TVLDGQLLTSASPSWRDTLRERLLAVDAQGREGGLAALVLGDDSGLSTADWQVLQDTGTVHLLVISGTHIGLLSGLIYGL
VAGLARWGVWPRFIPWLPAACLLAFMGALTYGFLAGFEVPVRRACVMIGMVLVWRLRFRQLGVSWPMLVSLNLVLVFEPL
VSLTPGFWLSFSAVGVLILMFSARLGAWHWLRSWTRAQWLIAVGLLPMLVALNLPVSLSGPAANLLAVPWISLVTLPLAL
LGTGLIAVPTVGEGLLWLAGGSMEWLFGLLAWVARLIPAWTGPSVPFWAWGVSMMGAVLLLLPSGVPMRLLGWPMLLLCV
FPPIKSVPEGHVEVLQLDVGQGLAILLRTREHSLLYDAGPRFGEFDIGQRVVLPAIRKAGVTVLDVMMLSHADADHAGGA
PAIVQALQVDRVLAGDVARLPPELGAQACRNGESWRWNEVTFSTWIWDAAAEGNQASCVLSVEANGERLLLTGDIDIKAE
RAMLDDGFEVRADWLQAPHHGSRSSSSRPFLRGVSPRGVLISRGRNNSFGHPHPLVMSRYRWMDIDTYDSAELGAITVQL
GAFGEPRAERRKMRFWRE

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=763763 OYW20_RS17790 WP_268797250.1 3971044..3973260(-) (comA) [Pseudomonas huanghezhanensis strain BSw22131]
ATGCGCACAGGGATGCTTGCGCTTGCATTGGGGCTGTTGGCCCTGCGTTTTTTACCGACATTGCCGCCCGTCTGGTTATT
GCTGTTAATGCCGGTGGTCGCGCTGATGTTGCTCCCGTTTCGTACGTACCCGTTGGCTTTTTTCCTGTTCGGACTTGCGT
GGGCCTGCGCCTCGGCGCAGTGGGCGCTCGACGATCGCCTGGCCCCAAGGCTCGACGGGCAGACGCTCTGGTTGCAGGGC
CAGATTGTCGGCCTGCCGCACAGTGGCGAAGAGGTTGTACGGTTTGAACTCGAAAACCCCCAGTCCCGTCGCACCCGGCT
GCCACAGAAGATTCGTGTCGCCTGGTACGGCGGACCAGCGGTGCGCAGCGGCGAAACGTGGCGTCTGGCAGTCAAGCTCA
AGGCCCCCGGCGGTCTGGTCAATCCCGACGCGTTCGATTACGAAGCGTGGCTGCTGGCCCAGCGGATTGGCGCGACGGGT
ACCGTGCTCGACGGGCAGTTACTGACCTCGGCTTCGCCGTCATGGCGCGATACGCTTCGGGAGCGCTTGCTTGCCGTGGA
TGCTCAAGGTCGTGAGGGCGGCTTGGCAGCGCTGGTGCTCGGCGACGATTCCGGGCTCAGCACGGCCGACTGGCAGGTGC
TGCAAGACACCGGCACGGTTCACTTACTGGTGATTTCCGGCACTCACATCGGCTTGCTCAGCGGTCTGATCTACGGACTG
GTCGCCGGACTGGCACGGTGGGGTGTGTGGCCGCGATTCATCCCATGGCTGCCTGCTGCGTGCCTTCTCGCGTTCATGGG
TGCGCTGACTTACGGCTTTCTTGCGGGCTTCGAGGTGCCGGTCCGACGCGCCTGCGTGATGATCGGCATGGTGCTGGTGT
GGCGACTGCGCTTTCGTCAGCTGGGCGTTAGTTGGCCGATGCTGGTGTCACTGAATCTGGTTCTTGTCTTCGAACCACTG
GTCAGCCTTACGCCTGGTTTCTGGCTGTCGTTCAGCGCCGTCGGCGTGCTTATTCTGATGTTCAGCGCACGTTTGGGCGC
CTGGCACTGGTTGCGAAGCTGGACGCGGGCGCAGTGGCTCATCGCCGTCGGCCTGCTGCCGATGCTCGTGGCACTCAATC
TGCCTGTAAGCCTCAGCGGACCTGCTGCGAACCTGCTTGCGGTACCTTGGATCAGTCTGGTGACGTTGCCTCTTGCGCTG
CTGGGTACCGGGCTTATCGCAGTGCCAACCGTGGGTGAGGGGTTATTGTGGCTGGCAGGCGGATCGATGGAGTGGCTATT
TGGGCTGCTGGCGTGGGTCGCTCGCTTGATACCCGCCTGGACCGGTCCGTCTGTGCCGTTTTGGGCCTGGGGCGTCAGCA
TGATGGGGGCGGTCCTGCTGTTATTGCCCAGCGGTGTGCCGATGCGGCTGTTGGGCTGGCCGATGTTGTTGCTCTGTGTT
TTCCCGCCGATCAAAAGCGTGCCGGAGGGGCATGTCGAGGTGCTGCAACTGGACGTAGGCCAGGGACTGGCAATTTTGCT
GCGCACCCGGGAGCACAGCCTTCTGTATGACGCCGGTCCGCGCTTTGGCGAATTCGATATCGGACAGCGGGTGGTGCTTC
CCGCCATCCGCAAAGCCGGGGTGACGGTGTTGGACGTGATGATGCTCAGCCACGCCGACGCCGACCATGCCGGAGGCGCC
CCGGCCATTGTGCAGGCGCTGCAGGTGGATCGGGTGTTGGCAGGCGACGTGGCGAGGCTGCCGCCAGAGCTGGGCGCGCA
AGCCTGTCGCAATGGAGAATCCTGGCGCTGGAACGAGGTGACGTTTTCGACCTGGATCTGGGACGCCGCCGCTGAAGGCA
ATCAGGCGTCTTGCGTGCTCAGTGTCGAGGCCAACGGTGAGCGTCTCTTGCTGACCGGGGATATCGACATCAAAGCCGAG
CGTGCAATGCTCGATGACGGATTTGAAGTACGTGCCGACTGGCTACAGGCGCCACATCACGGCAGCCGCAGCTCATCGTC
CCGGCCTTTCCTGCGCGGGGTGTCGCCACGCGGCGTGCTCATCTCCCGAGGGCGCAACAACAGCTTTGGCCACCCGCATC
CGTTGGTGATGTCGCGCTACCGCTGGATGGACATCGACACCTACGACAGCGCAGAGCTTGGGGCCATCACGGTGCAATTG
GGTGCCTTTGGCGAGCCTCGGGCCGAGCGAAGAAAGATGCGCTTCTGGCGTGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(22-165)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-666)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.313

97.019

0.595
  comA Ralstonia pseudosolanacearum GMI1000

31.872

100

0.364