Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OYW20_RS17785 Genome accession   NZ_CP113949
Coordinates   3970285..3970959 (-) Length   224 a.a.
NCBI ID   WP_268797249.1    Uniprot ID   -
Organism   Pseudomonas huanghezhanensis strain BSw22131     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3965285..3975959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OYW20_RS17755 - 3966159..3966755 (-) 597 WP_268797243.1 NTP transferase domain-containing protein -
  OYW20_RS17760 murB 3966832..3967851 (-) 1020 WP_268797244.1 UDP-N-acetylmuramate dehydrogenase -
  OYW20_RS17765 kdsB 3967898..3968662 (-) 765 WP_268797245.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OYW20_RS17770 - 3968659..3968844 (-) 186 WP_268797246.1 Trm112 family protein -
  OYW20_RS17775 lpxK 3968862..3969857 (-) 996 WP_268797247.1 tetraacyldisaccharide 4'-kinase -
  OYW20_RS17780 - 3969857..3970288 (-) 432 WP_268797248.1 biopolymer transporter ExbD -
  OYW20_RS17785 exbB 3970285..3970959 (-) 675 WP_268797249.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OYW20_RS17790 comA 3971044..3973260 (-) 2217 WP_268797250.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OYW20_RS17795 - 3973413..3973934 (+) 522 WP_268797251.1 DUF2062 domain-containing protein -
  OYW20_RS17800 - 3974028..3974807 (-) 780 WP_268797252.1 ABC transporter permease -
  OYW20_RS17805 - 3974804..3975736 (-) 933 WP_268797253.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24263.59 Da        Isoelectric Point: 7.3249

>NTDB_id=763762 OYW20_RS17785 WP_268797249.1 3970285..3970959(-) (exbB) [Pseudomonas huanghezhanensis strain BSw22131]
MWELVKSGGWMMLPIILSSIAAVGIIIERLWTLRASRITPPHLLGQVWRWIKDKQLNGEKLKELRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHDLERYLATLGTIAAMAPLLGLLGTVLGMIDIFSSFTSSGMTGNAGMLAGGIAKALICTA
SGLTVAIPAIFFHRYLQSRVDELVVGMEQEAIKLVEVVQGDRDVDLVEVNLPDKPAGKAEGKKK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=763762 OYW20_RS17785 WP_268797249.1 3970285..3970959(-) (exbB) [Pseudomonas huanghezhanensis strain BSw22131]
GTGTGGGAACTGGTCAAATCTGGTGGCTGGATGATGCTACCGATCATTCTGAGTTCCATCGCCGCCGTCGGGATCATCAT
CGAACGTCTGTGGACCTTGCGTGCCAGCCGTATCACGCCGCCGCATTTGCTCGGTCAGGTGTGGCGCTGGATCAAAGACA
AACAGCTCAATGGCGAAAAGCTCAAGGAGCTGCGCGCCGACTCACCGCTGGGTGAGATCCTGGCTGCGGGTCTGGCCAAT
TCCCGTCATGGTCGCGAAATCATGAAGGAATGCATTGAAGAGGCCGCAGCCCGCGTCATTCATGATCTCGAACGTTATCT
GGCGACGCTGGGCACCATCGCTGCCATGGCGCCGTTGTTGGGGTTGTTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GTTCGTTTACCAGCTCTGGCATGACCGGAAACGCAGGCATGCTCGCAGGCGGTATCGCCAAGGCGCTGATCTGCACCGCG
TCCGGCCTGACAGTCGCTATCCCGGCGATTTTCTTCCATCGCTACCTGCAAAGCCGTGTCGATGAGCTGGTCGTTGGCAT
GGAGCAGGAGGCGATCAAGCTGGTTGAAGTAGTGCAGGGTGATCGCGATGTGGATCTGGTCGAAGTCAACTTGCCAGACA
AGCCCGCCGGCAAGGCCGAGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.692

92.857

0.768