Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMZ10_RS04885 Genome accession   NZ_CP125739
Coordinates   926314..926865 (-) Length   183 a.a.
NCBI ID   WP_002865738.1    Uniprot ID   O69302
Organism   Campylobacter jejuni strain MS2202     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 921314..931865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ10_RS04855 (QMZ10_04860) ctsT 921363..921665 (-) 303 WP_002853046.1 type II secretion system protein Machinery gene
  QMZ10_RS04860 (QMZ10_04865) proC 921662..922393 (-) 732 WP_002885405.1 pyrroline-5-carboxylate reductase Machinery gene
  QMZ10_RS04865 (QMZ10_04870) fliW 922393..922782 (-) 390 WP_002852982.1 flagellar assembly protein FliW -
  QMZ10_RS04870 (QMZ10_04875) - 922943..923590 (+) 648 WP_002885144.1 outer membrane protein assembly factor BamD -
  QMZ10_RS04875 (QMZ10_04880) lon 923607..925982 (+) 2376 WP_002885146.1 endopeptidase La -
  QMZ10_RS04880 (QMZ10_04885) rpsR 926043..926303 (-) 261 WP_002853032.1 30S ribosomal protein S18 -
  QMZ10_RS04885 (QMZ10_04890) ssb 926314..926865 (-) 552 WP_002865738.1 single-stranded DNA-binding protein Machinery gene
  QMZ10_RS04890 (QMZ10_04895) rpsF 926874..927251 (-) 378 WP_002853062.1 30S ribosomal protein S6 -
  QMZ10_RS04895 (QMZ10_04900) - 927338..928204 (-) 867 WP_002868637.1 VirK family antimicrobial peptide resistance protein -
  QMZ10_RS04900 (QMZ10_04905) rseP 928197..929303 (-) 1107 WP_002852927.1 RIP metalloprotease RseP -
  QMZ10_RS04905 (QMZ10_04910) pgsA 929300..929836 (-) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QMZ10_RS04910 (QMZ10_04915) rdxA 929961..930566 (-) 606 WP_283803482.1 NAD(P)H-dependent oxidoreductase -
  QMZ10_RS04915 (QMZ10_04920) - 930566..931186 (-) 621 WP_059280257.1 NAD(P)H-dependent oxidoreductase -
  QMZ10_RS04920 (QMZ10_04925) - 931250..931675 (-) 426 WP_002859154.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20683.58 Da        Isoelectric Point: 5.0431

>NTDB_id=763758 QMZ10_RS04885 WP_002865738.1 926314..926865(-) (ssb) [Campylobacter jejuni strain MS2202]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=763758 QMZ10_RS04885 WP_002865738.1 926314..926865(-) (ssb) [Campylobacter jejuni strain MS2202]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O69302

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361