Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   OZX61_RS10575 Genome accession   NZ_CP113932
Coordinates   2198135..2198593 (-) Length   152 a.a.
NCBI ID   WP_213014634.1    Uniprot ID   -
Organism   Acinetobacter sp. ESL0695     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2193135..2203593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX61_RS10540 (OZX61_10540) - 2193605..2194372 (-) 768 WP_277094754.1 TSUP family transporter -
  OZX61_RS10545 (OZX61_10545) truB 2194388..2195302 (-) 915 WP_277094755.1 tRNA pseudouridine(55) synthase TruB -
  OZX61_RS10550 (OZX61_10550) rplS 2195458..2195826 (-) 369 WP_195770926.1 50S ribosomal protein L19 -
  OZX61_RS10555 (OZX61_10555) trmD 2195966..2196706 (-) 741 WP_277094756.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OZX61_RS10560 (OZX61_10560) rimM 2196753..2197301 (-) 549 WP_195770924.1 ribosome maturation factor RimM -
  OZX61_RS10565 (OZX61_10565) rpsP 2197321..2197578 (-) 258 WP_277094757.1 30S ribosomal protein S16 -
  OZX61_RS10570 (OZX61_10570) comF 2197707..2198135 (-) 429 WP_277094758.1 type IV pilin protein Machinery gene
  OZX61_RS10575 (OZX61_10575) comE 2198135..2198593 (-) 459 WP_213014634.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  OZX61_RS10580 (OZX61_10580) - 2198609..2202421 (-) 3813 WP_277094759.1 pilus assembly protein PilY -
  OZX61_RS10585 (OZX61_10585) - 2202435..2203142 (-) 708 WP_277094760.1 pilus assembly protein PilX -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16752.89 Da        Isoelectric Point: 9.0907

>NTDB_id=763627 OZX61_RS10575 WP_213014634.1 2198135..2198593(-) (comE) [Acinetobacter sp. ESL0695]
MKQNGFTLLELMVVVVIVAIFAAIAIPSYQSYMRRNNEGQAIQEMQRISVLLERHKARNFTYKLFSLDGTNQSTNTVTLQ
NGYTVQVVDGSSTSNAVPLNNDNSPGQTWAIRAQTTDPQNFTLLLTSQGLRCKNQAASNVTFNTCGTGTQGW

Nucleotide


Download         Length: 459 bp        

>NTDB_id=763627 OZX61_RS10575 WP_213014634.1 2198135..2198593(-) (comE) [Acinetobacter sp. ESL0695]
ATGAAACAAAATGGCTTTACTCTTCTAGAGCTGATGGTAGTTGTAGTAATTGTTGCAATTTTTGCAGCAATTGCTATTCC
AAGCTATCAGAGTTATATGAGGCGTAATAACGAAGGTCAAGCAATTCAAGAAATGCAGAGAATCTCCGTACTTCTAGAGC
GTCACAAGGCACGTAATTTCACTTATAAACTTTTTTCTCTAGATGGAACCAATCAAAGTACAAATACAGTAACTCTACAA
AATGGTTATACCGTACAAGTCGTTGATGGAAGTAGTACCTCAAATGCTGTGCCTTTGAATAATGACAACAGCCCAGGTCA
AACTTGGGCAATACGTGCACAAACTACTGATCCTCAAAACTTTACTTTGCTTTTAACAAGCCAAGGATTACGTTGTAAAA
ACCAAGCAGCATCTAATGTCACATTTAATACATGTGGTACCGGCACTCAGGGGTGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(27-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

46.061

100

0.5
  pilY2 Acinetobacter baumannii D1279779

45.86

100

0.474