Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OZX61_RS10570 Genome accession   NZ_CP113932
Coordinates   2197707..2198135 (-) Length   142 a.a.
NCBI ID   WP_277094758.1    Uniprot ID   -
Organism   Acinetobacter sp. ESL0695     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2192707..2203135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX61_RS10540 (OZX61_10540) - 2193605..2194372 (-) 768 WP_277094754.1 TSUP family transporter -
  OZX61_RS10545 (OZX61_10545) truB 2194388..2195302 (-) 915 WP_277094755.1 tRNA pseudouridine(55) synthase TruB -
  OZX61_RS10550 (OZX61_10550) rplS 2195458..2195826 (-) 369 WP_195770926.1 50S ribosomal protein L19 -
  OZX61_RS10555 (OZX61_10555) trmD 2195966..2196706 (-) 741 WP_277094756.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OZX61_RS10560 (OZX61_10560) rimM 2196753..2197301 (-) 549 WP_195770924.1 ribosome maturation factor RimM -
  OZX61_RS10565 (OZX61_10565) rpsP 2197321..2197578 (-) 258 WP_277094757.1 30S ribosomal protein S16 -
  OZX61_RS10570 (OZX61_10570) comF 2197707..2198135 (-) 429 WP_277094758.1 type IV pilin protein Machinery gene
  OZX61_RS10575 (OZX61_10575) comE 2198135..2198593 (-) 459 WP_213014634.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  OZX61_RS10580 (OZX61_10580) - 2198609..2202421 (-) 3813 WP_277094759.1 pilus assembly protein PilY -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15655.75 Da        Isoelectric Point: 8.9778

>NTDB_id=763626 OZX61_RS10570 WP_277094758.1 2197707..2198135(-) (comF) [Acinetobacter sp. ESL0695]
MKSSQGFTFMEMMIVVAIIAILAAIAYPLYTQHIVKTNRVDVQSELMRLSTRLQEYRVINHTYRNATLANIGGTSNYPAQ
GTANYAITLALNTDNRGYTLTATPVAGRQNGDGVVCLNQDGQRFWSKGQNVCTLSATSTWND

Nucleotide


Download         Length: 429 bp        

>NTDB_id=763626 OZX61_RS10570 WP_277094758.1 2197707..2198135(-) (comF) [Acinetobacter sp. ESL0695]
ATGAAAAGTTCTCAAGGTTTTACTTTCATGGAAATGATGATAGTAGTCGCTATTATTGCGATATTAGCGGCTATTGCATA
TCCACTATATACACAGCATATTGTGAAAACTAACCGTGTTGATGTGCAAAGTGAACTCATGCGACTTTCAACCAGATTGC
AAGAATATCGTGTAATTAACCATACTTACCGTAATGCGACTTTAGCGAATATCGGTGGTACTTCGAATTATCCTGCTCAA
GGCACAGCCAACTATGCAATTACACTTGCGCTAAATACAGATAATCGTGGATATACATTAACCGCAACACCAGTTGCTGG
TAGACAAAATGGCGATGGTGTTGTTTGTCTGAACCAAGATGGTCAAAGATTTTGGTCAAAAGGACAAAATGTATGCACTT
TAAGTGCAACATCGACATGGAATGATTGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-116)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

55.634

100

0.556
  pilE Acinetobacter baumannii D1279779

50.714

98.592

0.5