Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QMK12_RS02995 Genome accession   NZ_CP125395
Coordinates   583354..584127 (+) Length   257 a.a.
NCBI ID   WP_070295605.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC94     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 578354..589127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK12_RS02980 (QMK12_02980) - 579203..581137 (-) 1935 WP_283155631.1 ribonuclease R -
  QMK12_RS02985 (QMK12_02985) ilvC 581256..582278 (+) 1023 WP_002921147.1 ketol-acid reductoisomerase -
  QMK12_RS02990 (QMK12_02990) - 582282..583364 (+) 1083 WP_070295604.1 divergent polysaccharide deacetylase family protein -
  QMK12_RS02995 (QMK12_02995) dprA 583354..584127 (+) 774 WP_070295605.1 DNA-processing protein DprA Machinery gene
  QMK12_RS03000 (QMK12_03000) dprB 584124..584507 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  QMK12_RS03005 (QMK12_03005) - 584536..585375 (+) 840 WP_083262324.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  QMK12_RS03010 (QMK12_03010) msrA 585551..586048 (-) 498 WP_283155632.1 peptide-methionine (S)-S-oxide reductase MsrA -
  QMK12_RS03015 (QMK12_03015) ppa 586089..586607 (-) 519 WP_002855031.1 inorganic diphosphatase -
  QMK12_RS03020 (QMK12_03020) adk 586617..587195 (-) 579 WP_002855137.1 adenylate kinase -
  QMK12_RS03025 (QMK12_03025) aspS 587192..588943 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28706.53 Da        Isoelectric Point: 7.6510

>NTDB_id=763209 QMK12_RS02995 WP_070295605.1 583354..584127(+) (dprA) [Campylobacter jejuni strain SKBC94]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SVAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTATNLLLKENKAKLICDFKEFVSEFASIDTNQDELLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=763209 QMK12_RS02995 WP_070295605.1 583354..584127(+) (dprA) [Campylobacter jejuni strain SKBC94]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCTTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTGTGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGCAACTAATTTGCT
TTTAAAAGAAAATAAAGCAAAATTGATTTGTGATTTCAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATACAAATCAAG
ATGAACTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAC
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.828

99.611

0.984
  dprA Helicobacter pylori 26695

48.333

93.385

0.451