Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QMK12_RS03000 Genome accession   NZ_CP125395
Coordinates   584124..584507 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC94     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 579124..589507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK12_RS02980 (QMK12_02980) - 579203..581137 (-) 1935 WP_283155631.1 ribonuclease R -
  QMK12_RS02985 (QMK12_02985) ilvC 581256..582278 (+) 1023 WP_002921147.1 ketol-acid reductoisomerase -
  QMK12_RS02990 (QMK12_02990) - 582282..583364 (+) 1083 WP_070295604.1 divergent polysaccharide deacetylase family protein -
  QMK12_RS02995 (QMK12_02995) dprA 583354..584127 (+) 774 WP_070295605.1 DNA-processing protein DprA Machinery gene
  QMK12_RS03000 (QMK12_03000) dprB 584124..584507 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  QMK12_RS03005 (QMK12_03005) - 584536..585375 (+) 840 WP_083262324.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  QMK12_RS03010 (QMK12_03010) msrA 585551..586048 (-) 498 WP_283155632.1 peptide-methionine (S)-S-oxide reductase MsrA -
  QMK12_RS03015 (QMK12_03015) ppa 586089..586607 (-) 519 WP_002855031.1 inorganic diphosphatase -
  QMK12_RS03020 (QMK12_03020) adk 586617..587195 (-) 579 WP_002855137.1 adenylate kinase -
  QMK12_RS03025 (QMK12_03025) aspS 587192..588943 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=763210 QMK12_RS03000 WP_002856861.1 584124..584507(+) (dprB) [Campylobacter jejuni strain SKBC94]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=763210 QMK12_RS03000 WP_002856861.1 584124..584507(+) (dprB) [Campylobacter jejuni strain SKBC94]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TAATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGTGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449