Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OXH62_RS12880 Genome accession   NZ_CP113803
Coordinates   2798964..2800310 (+) Length   448 a.a.
NCBI ID   WP_375747904.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain YJY915     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2793964..2805310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXH62_RS12855 (OXH62_12795) pgeF 2794152..2794901 (-) 750 WP_375747903.1 peptidoglycan editing factor PgeF -
  OXH62_RS12860 (OXH62_12800) rluD 2794898..2795860 (-) 963 WP_007959567.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OXH62_RS12865 (OXH62_12805) - 2796013..2797029 (+) 1017 WP_127799984.1 outer membrane protein assembly factor BamD -
  OXH62_RS12870 (OXH62_12810) - 2797155..2797388 (+) 234 WP_115079251.1 PP0621 family protein -
  OXH62_RS12875 (OXH62_12815) pilS 2797378..2798967 (+) 1590 WP_375748053.1 PAS domain-containing sensor histidine kinase Regulator
  OXH62_RS12880 (OXH62_12820) pilR 2798964..2800310 (+) 1347 WP_375747904.1 sigma-54-dependent transcriptional regulator Regulator
  OXH62_RS12885 (OXH62_12825) thiO 2800370..2801470 (-) 1101 WP_375747905.1 glycine oxidase ThiO -
  OXH62_RS12890 (OXH62_12830) - 2801528..2801929 (-) 402 WP_085648738.1 type IV pilin protein -
  OXH62_RS12895 (OXH62_12835) - 2801944..2805033 (-) 3090 WP_375747906.1 pilus assembly protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50048.32 Da        Isoelectric Point: 6.6655

>NTDB_id=763142 OXH62_RS12880 WP_375747904.1 2798964..2800310(+) (pilR) [Pseudomonas chlororaphis strain YJY915]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLADAQALLHRETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGSALRMPAPGNVCTSIDRRLLGDSPPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERREDIEALA
GHMLKRLANGTGQPAARLHPHALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNGTAEGGIADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=763142 OXH62_RS12880 WP_375747904.1 2798964..2800310(+) (pilR) [Pseudomonas chlororaphis strain YJY915]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAATCTCGCAGATGCCCAAGCGCTGCTGCACCGCGAGACCTTCGATCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGCCTGGAACTGGTGCAGCACATTCAGCAACGTTATCCTCAACTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACGGCAATCAACGCCCTGAAAGCCGGGGCTTTCGACTTCCTGACCAA
ACCGGTGGACCTGACGCGCCTGCGCGAGCTGGTCGGCTCGGCGTTGCGCATGCCGGCGCCGGGCAATGTCTGCACTTCGA
TCGACCGGCGGTTGCTCGGCGACTCACCACCCATGCGCAATCTGCGCAAACAGATCGACAAACTGGCCCGCAGCCAGGCG
CCGGTCTACATCAGCGGCGAATCCGGCAGCGGCAAGGAGTTGGTCGCCCGGCTGATTCATGAACAAGGCCCGCGCGCCAG
CCAGCCATTCGTACCGGTGAACTGCGGGGCGATTCCTTCAGAGTTGATGGAGAGCGAATTTTTCGGCCACCGCAAAGGCA
GTTTCAGCGGCGCGGTGGAGGATAAACCGGGGCTGTTCCAGGCTGCTCACGGCGGCACGCTGTTTCTCGATGAAGTGGCG
GATCTGCCGCTGCCGATGCAGGTCAAGCTGCTACGGGCAATCCAGGAGAAAGCCGTACGCAGCGTCGGCGGCCAACAGGA
AACCGTGGTCGATGTGCGCATCCTCTGCGCGACACACAAGGACCTCGACGCTGAAGTGGCTGCCGAGCGTTTTCGTCAGG
ATCTGTATTACCGGCTGAACGTGATCGAACTGCGCGTACCGTCCCTGCGCGAACGTCGCGAGGACATCGAAGCCTTGGCC
GGCCATATGCTCAAACGCCTGGCCAATGGCACCGGGCAGCCGGCGGCACGTCTTCATCCTCATGCCCTCGAGGCACTGAA
AAATTACCGTTTTCCGGGCAACGTGCGGGAGCTGGAGAACGTGCTCGAGCGGGCGCACACCCTGTGTGAAAACCGCACGA
TCGAGGCTGAGGACTTACGTTTGAGTGAAGGTAATGGCACCGCAGAAGGTGGTATTGCCGATCTCACGCAGATCGACAAC
CTGGAAGACTATCTGGAGAGCGTCGAGCGCAAACTGATTTTGCAGGCGCTGGAAGAAACCCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGCCTGTCGTTTCGGTCGATGCGCTACAGGCTGAAGAAACTGGGGCTGGATTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.684

98.884

0.788
  pilR Acinetobacter baumannii strain A118

48.366

100

0.496