Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OXH62_RS12875 Genome accession   NZ_CP113803
Coordinates   2797378..2798967 (+) Length   529 a.a.
NCBI ID   WP_375748053.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain YJY915     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2792378..2803967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXH62_RS12855 (OXH62_12795) pgeF 2794152..2794901 (-) 750 WP_375747903.1 peptidoglycan editing factor PgeF -
  OXH62_RS12860 (OXH62_12800) rluD 2794898..2795860 (-) 963 WP_007959567.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OXH62_RS12865 (OXH62_12805) - 2796013..2797029 (+) 1017 WP_127799984.1 outer membrane protein assembly factor BamD -
  OXH62_RS12870 (OXH62_12810) - 2797155..2797388 (+) 234 WP_115079251.1 PP0621 family protein -
  OXH62_RS12875 (OXH62_12815) pilS 2797378..2798967 (+) 1590 WP_375748053.1 PAS domain-containing sensor histidine kinase Regulator
  OXH62_RS12880 (OXH62_12820) pilR 2798964..2800310 (+) 1347 WP_375747904.1 sigma-54-dependent transcriptional regulator Regulator
  OXH62_RS12885 (OXH62_12825) thiO 2800370..2801470 (-) 1101 WP_375747905.1 glycine oxidase ThiO -
  OXH62_RS12890 (OXH62_12830) - 2801528..2801929 (-) 402 WP_085648738.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58473.26 Da        Isoelectric Point: 6.6677

>NTDB_id=763141 OXH62_RS12875 WP_375748053.1 2797378..2798967(+) (pilS) [Pseudomonas chlororaphis strain YJY915]
MIAEADNADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDELLRNGSWLYLVLNILLVVFLENIRRPAQLF
GLALVDILLLCGVFYAAGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAVASLGIVGLSFLLSFSHPLSANDYLQAGTLG
ALCFAASLLVQGLIRRLEVSENLAELRASEVVGLEALNALILQRMRTGILVLDEQRRVQLANHSAKTLLGQTHLEGDLID
EHSSALVERLQLWLNNPTLRPQSLKIAGNGLELQPSFIALEQSPNRQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEQFVSESREQAGER
QHIHLHIGPGDFRTLMDPGQLTQILDNLLRNGWRHSALLHDPAEVWLTLLIDPESTLAVLEVQDNGPGVPLDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=763141 OXH62_RS12875 WP_375748053.1 2797378..2798967(+) (pilS) [Pseudomonas chlororaphis strain YJY915]
GTGATCGCTGAGGCCGACAACGCCGACAGCAAACAGGCTCAGCGACTGCTGCGCCTCTATCATCTGTACCGTTTGAGTGT
CGGCATCACCCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACCTCGGCCAACGACGAGTTGCTGCGCA
ATGGCAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTCGAGAATATCCGCCGTCCCGCCCAGTTGTTC
GGCCTGGCACTGGTCGACATATTGCTGCTGTGCGGCGTGTTCTATGCGGCGGGCGGTGTGGCCAGTGCGATCGGCAACTT
GCTGATCGTTTCGGTGGCCATCAGCAACACGTTACTGCGACGACGAATCGGCTTGCTGATCGCCGCCGTCGCCTCCCTCG
GCATCGTCGGACTCAGCTTTCTGCTGAGTTTCAGCCATCCACTGAGCGCCAACGACTATCTGCAGGCCGGCACCCTCGGC
GCCCTATGCTTCGCGGCGTCATTACTGGTGCAAGGGTTGATCCGCCGTCTCGAAGTCAGTGAGAACCTGGCCGAGTTGCG
CGCCAGCGAGGTCGTGGGGCTCGAAGCCCTCAACGCACTGATCCTGCAGCGCATGCGCACCGGCATTCTGGTGCTCGACG
AACAGCGCCGGGTGCAACTCGCCAATCACAGCGCCAAGACCCTGCTGGGCCAGACACACCTTGAAGGCGACTTGATCGAC
GAGCACTCGAGCGCATTGGTCGAACGCCTGCAACTGTGGCTGAACAACCCGACCCTGCGCCCGCAAAGCCTGAAGATCGC
CGGTAACGGCCTGGAGTTGCAGCCGAGTTTCATCGCCCTGGAACAGAGCCCGAACCGCCAGACCCTGGTGTTTCTCGAAG
ACCTCGCCCAGATCGCCCAGCAGGCCCAGCAATTGAAACTGGCCGCGCTGGGCCGGTTGACCGCCGGTATCGCCCATGAA
ATCCGCAATCCGCTGGGGGCCATCAGTCATGCCGCGCAGCTGTTGCAGGAATCCGAGGAACTCGATGGCGCGGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AGAGCGCACCGCAACGGCTGGATCTCAAACCGTGGCTGGAGCAGTTCGTCAGCGAGAGCCGCGAACAGGCCGGCGAGCGC
CAGCACATTCATCTGCACATCGGCCCGGGGGATTTCCGCACGTTGATGGATCCCGGCCAGCTCACGCAGATTCTCGACAA
TCTGTTACGCAACGGCTGGCGCCACAGTGCCCTTTTGCACGATCCGGCCGAGGTCTGGCTGACGCTGTTGATCGACCCCG
AAAGCACGCTGGCCGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGCCGCTGGATCAACAGGCTCACCTGTTCGAACCC
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCGCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.755

100

0.609