Detailed information NTG0763135

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: OXH62_RS09415
• Genome accession: NZ_CP113803
• Coordinates: 2062385..2064628 (-)
• Length: 747 a.a.
• NCBI ID: WP_375747688.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain YJY915
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2057385..2069628

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OXH62_RS09380 (OXH62_09365)	murB	2057785..2058804 (-)	1020	WP_375747686.1	UDP-N-acetylmuramate dehydrogenase	-
OXH62_RS09385 (OXH62_09370)	-	2058801..2059265 (-)	465	WP_375747687.1	low molecular weight protein-tyrosine-phosphatase	-
OXH62_RS09390 (OXH62_09375)	kdsB	2059265..2060029 (-)	765	WP_064383500.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
OXH62_RS09395 (OXH62_09380)	-	2060026..2060211 (-)	186	WP_003174668.1	Trm112 family protein	-
OXH62_RS09400 (OXH62_09385)	lpxK	2060236..2061246 (-)	1011	WP_127799332.1	tetraacyldisaccharide 4'-kinase	-
OXH62_RS09405 (OXH62_09390)	-	2061246..2061674 (-)	429	WP_007950767.1	biopolymer transporter ExbD	-
OXH62_RS09410 (OXH62_09395)	exbB	2061671..2062306 (-)	636	WP_007950766.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
OXH62_RS09415 (OXH62_09400)	comA	2062385..2064628 (-)	2244	WP_375747688.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
OXH62_RS09420 (OXH62_09405)	-	2064765..2065283 (+)	519	WP_007950764.1	DUF2062 domain-containing protein	-
OXH62_RS09425 (OXH62_09410)	-	2065338..2066117 (-)	780	WP_007950763.1	ABC transporter permease	-
OXH62_RS09430 (OXH62_09415)	-	2066114..2067046 (-)	933	WP_007950762.1	ABC transporter ATP-binding protein	-
OXH62_RS09435 (OXH62_09420)	-	2067180..2067803 (-)	624	WP_375747689.1	glutathione S-transferase family protein	-
OXH62_RS09440 (OXH62_09425)	-	2067847..2068506 (-)	660	WP_375747690.1	transglutaminase family protein	-

Sequence

Protein

• Length: 747 a.a.
• Molecular weight: 82106.97 Da
• Isoelectric Point: 9.8710

>NTDB_id=763135 OXH62_RS09415 WP_375747688.1 2062385..2064628(-) (comA) [Pseudomonas chlororaphis strain YJY915]
MRTGMMALAVGLLAPVFLPGLPPVGLWLVLPWVALMLLPFRSYPLAFLLLGFAWAGFSAQMALNDRLPSRLDGETRWVEG
RVVGLPQNAEGVVRFELSDARSRHETLPSLMRLAWYAGPEVKSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TVKDGERLAPAQWAWRDSIRQRLLAVDAQGRNGALAALVLGDGSGLSREDWQTLQDTGTVHLLVISGQHIGLLAALMYAL
VAGLARVGIWPLRWPWLPWACGLAVTAALGYGLLAGFDVPVRRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLMDPL
ASLRPGLWLSFIAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPVLVALSLPISLSGPLANLLAVPWVSFAVLPPAL
LGTLLLPIPYVGEGLLWLAGGLIDGLFRALALIAGRWPAWVPTTMEWWVWALGGLGAVLLLLPRGVPLRPLGWPLLLVLA
FPPRERLAEGVADVWQLDVGQGLAILIRTRHHTLLYDSGPRFGDFDLGERVVLPALRKLGVEHLDLMLLSHADADHAGGA
LAVARGLPVNRVISGDPPGLAEELNAEACESGRHWQWDGVAFHLWQWADAHDSNQRSCVLQIEANGERLLLTGDIDSAAE
RDLLNSALAVHTQWLQAPHHGSRSSSSMALLKALQPQAVLISRGQGNSFGHPHPTVTARYRKQGIHIHDSAEQGAIHLQL
GRFQPARSMRQQRRFWRDPPLPGAEYR

Nucleotide

• Length: 2244 bp

>NTDB_id=763135 OXH62_RS09415 WP_375747688.1 2062385..2064628(-) (comA) [Pseudomonas chlororaphis strain YJY915]
ATGCGCACAGGGATGATGGCGCTGGCGGTCGGTCTGCTGGCTCCGGTTTTTTTACCGGGCTTGCCGCCGGTCGGGTTATG
GCTGGTGTTGCCGTGGGTGGCGCTGATGCTGCTGCCGTTTCGCAGCTATCCACTGGCGTTTTTGCTGCTTGGATTTGCAT
GGGCGGGTTTCAGCGCGCAGATGGCGCTGAATGATCGACTGCCTTCCCGGCTGGATGGCGAAACGCGCTGGGTGGAAGGG
CGGGTCGTCGGCTTGCCGCAGAATGCCGAGGGCGTTGTGCGCTTCGAACTGTCCGATGCGCGCTCGCGACACGAGACACT
GCCGTCGCTGATGCGTCTGGCCTGGTACGCCGGGCCTGAGGTCAAAAGTGGCGAACGCTGGCGACTGGCAGTCAAGCTCA
AGCGTCCCGGTGGCCTGCTCAATCCGGATGCGTTTGATTACGAAGCCTGGCTGCTGGCGCAGCGCATCGGCGCCACCGGG
ACGGTGAAGGATGGCGAGCGCCTGGCGCCGGCGCAGTGGGCCTGGCGTGACAGCATTCGCCAGCGCCTGCTTGCAGTGGA
TGCCCAGGGACGCAACGGAGCCTTGGCTGCGCTGGTGCTCGGTGATGGTTCGGGACTCAGTCGCGAGGATTGGCAGACTT
TGCAGGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGCCAGCATATCGGGCTGTTGGCGGCGTTGATGTATGCGCTG
GTCGCCGGGTTGGCGCGGGTCGGGATCTGGCCGTTGCGTTGGCCTTGGCTGCCTTGGGCGTGCGGTCTGGCAGTCACGGC
GGCGCTGGGCTACGGCCTGCTGGCCGGGTTCGACGTGCCGGTGCGGCGGGCCTGCGTAATGGTTGCGCTTGTGTTGCTGT
GGCGATTGCGATTTCGCCATCTCGGTGCCTGGTGGCCGTTGCTGCTGGCCTTCAACGGTGTGCTGTTGATGGATCCGCTG
GCCAGTCTGCGCCCGGGGTTATGGCTGTCCTTTATCGCGGTCGCCGTGCTGATCTTCACCTTCGGCGGCCGTCTGGGGCC
GTGGCGCTGGTGGCAGACCTGGACGCGCGCGCAGTGGTTGATCGCGATCGGCTTGTGCCCGGTGCTGGTGGCGTTGAGCC
TTCCGATCAGTCTCAGCGGACCACTGGCCAATCTGCTGGCGGTGCCGTGGGTCAGTTTCGCGGTGCTGCCGCCGGCGTTG
CTGGGCACATTGCTGCTGCCGATCCCCTATGTCGGGGAAGGGCTGCTGTGGCTGGCCGGTGGACTGATCGACGGATTGTT
CCGTGCATTGGCCCTGATTGCCGGGCGTTGGCCAGCGTGGGTGCCGACGACGATGGAGTGGTGGGTCTGGGCGCTGGGAG
GTCTTGGTGCAGTGCTGTTATTGCTACCTCGGGGCGTTCCCTTGCGTCCTTTGGGCTGGCCGTTGCTGCTGGTGCTGGCA
TTTCCGCCTCGAGAGCGTCTGGCCGAAGGCGTGGCCGATGTCTGGCAACTGGATGTCGGTCAGGGGTTGGCGATTCTGAT
CCGCACCCGGCATCACACCTTGCTGTACGACAGCGGTCCGCGTTTCGGCGACTTTGACCTCGGTGAGCGAGTGGTGCTGC
CCGCATTGCGCAAACTGGGCGTGGAACACCTCGATCTGATGCTGCTCAGCCATGCCGATGCCGATCACGCGGGTGGCGCA
CTCGCGGTGGCGAGAGGATTGCCGGTCAACCGGGTCATCAGTGGCGATCCGCCGGGGCTGGCCGAAGAACTGAACGCGGA
GGCCTGTGAAAGCGGCCGGCATTGGCAGTGGGACGGCGTTGCCTTTCATTTATGGCAGTGGGCCGACGCCCATGACAGCA
ACCAGCGTTCCTGCGTGTTGCAGATCGAAGCCAACGGCGAACGGTTGCTGCTGACCGGCGACATCGACAGCGCCGCCGAA
CGGGACCTGCTCAACAGCGCGTTGGCAGTTCATACCCAATGGCTGCAAGCTCCGCATCACGGCAGCCGCAGTTCCTCGTC
GATGGCCTTGCTCAAGGCTTTGCAGCCTCAGGCCGTGCTGATTTCCCGAGGGCAGGGCAATTCGTTCGGTCATCCGCACC
CGACGGTCACCGCCCGCTACCGCAAACAGGGCATACACATCCATGACAGCGCCGAACAGGGCGCCATTCATCTGCAACTG
GGGCGGTTTCAGCCGGCCCGGTCGATGCGTCAACAACGCCGCTTCTGGCGCGACCCGCCGTTGCCGGGGGCGGAGTACCG
TTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (26-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.448	96.252	0.601
comA	Ralstonia pseudosolanacearum GMI1000	34.872	100	0.364