Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OXH62_RS09410 Genome accession   NZ_CP113803
Coordinates   2061671..2062306 (-) Length   211 a.a.
NCBI ID   WP_007950766.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain YJY915     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2056671..2067306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXH62_RS09375 (OXH62_09360) - 2057068..2057538 (-) 471 WP_039770687.1 (2Fe-2S)-binding protein -
  OXH62_RS09380 (OXH62_09365) murB 2057785..2058804 (-) 1020 WP_375747686.1 UDP-N-acetylmuramate dehydrogenase -
  OXH62_RS09385 (OXH62_09370) - 2058801..2059265 (-) 465 WP_375747687.1 low molecular weight protein-tyrosine-phosphatase -
  OXH62_RS09390 (OXH62_09375) kdsB 2059265..2060029 (-) 765 WP_064383500.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OXH62_RS09395 (OXH62_09380) - 2060026..2060211 (-) 186 WP_003174668.1 Trm112 family protein -
  OXH62_RS09400 (OXH62_09385) lpxK 2060236..2061246 (-) 1011 WP_127799332.1 tetraacyldisaccharide 4'-kinase -
  OXH62_RS09405 (OXH62_09390) - 2061246..2061674 (-) 429 WP_007950767.1 biopolymer transporter ExbD -
  OXH62_RS09410 (OXH62_09395) exbB 2061671..2062306 (-) 636 WP_007950766.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OXH62_RS09415 (OXH62_09400) comA 2062385..2064628 (-) 2244 WP_375747688.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OXH62_RS09420 (OXH62_09405) - 2064765..2065283 (+) 519 WP_007950764.1 DUF2062 domain-containing protein -
  OXH62_RS09425 (OXH62_09410) - 2065338..2066117 (-) 780 WP_007950763.1 ABC transporter permease -
  OXH62_RS09430 (OXH62_09415) - 2066114..2067046 (-) 933 WP_007950762.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22915.03 Da        Isoelectric Point: 6.8770

>NTDB_id=763134 OXH62_RS09410 WP_007950766.1 2061671..2062306(-) (exbB) [Pseudomonas chlororaphis strain YJY915]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGEKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=763134 OXH62_RS09410 WP_007950766.1 2061671..2062306(-) (exbB) [Pseudomonas chlororaphis strain YJY915]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCGATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCTGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGTGAAATTCTCGCCGCGGGCCTGGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCGGCCGCCCGGGTCATCCACGAGCTGGAACGCTACGT
CAACGCGCTGGGCACCATCGCTGCCATGTCGCCGCTGCTCGGTCTGCTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCACCGGTTCCGGCATGACCACCAACGCTTCGGTGCTGGCCGGCGGTATTTCCAAGGCGCTGATCACCACCGCT
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTTCACCGTTTCCTGCAACGCCGCATCGATGAACTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGAAAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844