Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OXH18_RS23670 Genome accession   NZ_CP113797
Coordinates   5459041..5459409 (+) Length   122 a.a.
NCBI ID   WP_268609982.1    Uniprot ID   A0A9E8ZE27
Organism   Thermocoleostomius sinensis A174     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5454041..5464409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXH18_RS23650 (OXH18_23650) - 5454184..5455695 (+) 1512 WP_268609978.1 UbiD family decarboxylase -
  OXH18_RS23655 (OXH18_23655) - 5455720..5456307 (+) 588 WP_268609979.1 DUF3318 domain-containing protein -
  OXH18_RS23660 (OXH18_23660) - 5456350..5457210 (+) 861 WP_268609980.1 fructosamine kinase family protein -
  OXH18_RS23665 (OXH18_23665) - 5457343..5458818 (+) 1476 WP_268609981.1 aminobutyraldehyde dehydrogenase -
  OXH18_RS23670 (OXH18_23670) pilH 5459041..5459409 (+) 369 WP_268609982.1 PleD family two-component system response regulator Machinery gene
  OXH18_RS23675 (OXH18_23675) menD 5459550..5461331 (-) 1782 WP_268609983.1 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase -
  OXH18_RS23680 (OXH18_23680) - 5461848..5461931 (+) 84 WP_268613245.1 hypothetical protein -
  OXH18_RS23685 (OXH18_23685) - 5462055..5463254 (+) 1200 WP_268609984.1 class I SAM-dependent methyltransferase -
  OXH18_RS23690 (OXH18_23690) - 5463418..5463801 (+) 384 WP_315874790.1 ATP synthase subunit I -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13859.16 Da        Isoelectric Point: 5.8828

>NTDB_id=763121 OXH18_RS23670 WP_268609982.1 5459041..5459409(+) (pilH) [Thermocoleostomius sinensis A174]
MSTVLIVDDSQTLRQMLTELLENSGLRVVEAINGAEAKEKIQAKAPDLVITDLIMPQMNGYELCRWIKSDPTTQAIPVLI
CSTKSEEFDRYWGMKQGADAYITKPFHPVEMMKTVKQLLRSR

Nucleotide


Download         Length: 369 bp        

>NTDB_id=763121 OXH18_RS23670 WP_268609982.1 5459041..5459409(+) (pilH) [Thermocoleostomius sinensis A174]
ATGAGCACAGTTCTGATTGTGGACGATAGCCAAACGCTGCGGCAAATGCTCACGGAACTGTTAGAGAACAGTGGACTGCG
GGTGGTTGAGGCAATTAACGGAGCGGAAGCTAAGGAAAAAATTCAAGCAAAAGCACCTGATCTGGTGATTACAGACCTGA
TTATGCCGCAAATGAACGGCTATGAACTTTGTCGCTGGATTAAAAGCGACCCTACCACGCAAGCAATTCCTGTCTTAATT
TGCTCGACTAAAAGCGAAGAGTTCGATCGCTACTGGGGCATGAAGCAAGGGGCCGATGCCTACATCACCAAGCCCTTTCA
TCCCGTTGAGATGATGAAAACGGTAAAGCAACTATTGCGCAGCAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

57.025

99.18

0.566
  micA Streptococcus pneumoniae Cp1015

40

98.361

0.393
  pilG Acinetobacter baumannii strain A118

38.136

96.721

0.369